Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C09
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.67 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   0.88 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 129 PYQCLQANGPRGPPSASKFWRPGRMTGLPPPL-PEQALI 16
           P+Q  QA     PP+ S+   PG   G PP   P Q +I
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMI 65


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 498 HYKQSLMERWKSCY*KI 548
           HY Q+ +E WK C  KI
Sbjct: 191 HYDQTAIEIWKQCEGKI 207


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 61   ANDRLAPPPPRAGA 20
            A +R  PPPPR G+
Sbjct: 1696 APNRRCPPPPRMGS 1709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,158
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)