Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C08
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    31   0.14 
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    26   3.0  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    25   5.2  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   6.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.0  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 318 PQNVVALLYKLI*FYRKAIMSSQQ-LSPIIVSFLSNIVYVNP 196
           P  VV  L +L  F + A  +SQQ ++P  VS L N+V VNP
Sbjct: 483 PNKVVMCLSELGDFGKLATYTSQQNITPDYVSLLQNLVRVNP 524


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 240 PIIVSFLSNIVYVNPLLFYLINYISS 163
           P+I+SFL  + Y+ P +  L +Y  S
Sbjct: 102 PLIISFLRTVPYIGPYIDRLTSYQQS 127


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 237 IIVSFLSNIVYVNPLLFYLINYISSI*YKNNYLSLFVSKT 118
           ++  +  NI+    L+F ++ YISS+     Y  LF+S++
Sbjct: 4   LVPFYFINILSFGFLIFTVLLYISSVYVLPRYNELFISRS 43


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 320 LGFDPRVGSSGIGFFYSVSSRSLEFVP 400
           + FD  V SSGI  F      SLE VP
Sbjct: 659 INFDTEVPSSGIDTFSKKQFNSLESVP 685


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 337  GRVKWYWVFLLSIIPEFGICARYGDRLTRCHTWDGTKLGEM 459
            GR  W W+ +L  I   GI       LTR H       G++
Sbjct: 2301 GRTLWLWLGVLDAIQSVGIGMILLQTLTRRHVASTLMTGQI 2341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,440
Number of Sequences: 5004
Number of extensions: 45359
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)