Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C08
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    30   1.3  
11_06_0679 - 26227654-26227770,26234067-26236217                       27   6.9  
07_01_0075 - 558829-560859                                             27   9.1  
06_03_1181 - 28227746-28229115,28229130-28229307                       27   9.1  
06_01_0668 - 4882174-4884204                                           27   9.1  
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    27   9.1  

>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 340 RVKWYWVFLLSII-PEFGICARYGDRLTRCHTWDGTKLGEMCVV*FA 477
           +VKWY+V +  ++ P  G C  YG  LT  +   G   G++ +  FA
Sbjct: 463 QVKWYYVIIAYLLAPALGFCNAYGTGLTDMNM--GYNYGKIALFIFA 507


>11_06_0679 - 26227654-26227770,26234067-26236217
          Length = 755

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = -3

Query: 512 PVIPEGLGRGEVANYTTHISPSLVPSQ----V*QRVSLSPY---RAQIPNSGMILSRKTQ 354
           P++ +   + ++   T +++ +L+PSQ    +   +S  P+   + QIPN   +   +TQ
Sbjct: 134 PILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHISFQPHIPIQTQIPN--QVQYPQTQ 191

Query: 353 YHLTRP 336
            H T P
Sbjct: 192 LHQTHP 197


>07_01_0075 - 558829-560859
          Length = 676

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 400 RYGDRLTRCHTWDGTKLGEMCVV*FATSP 486
           +YGD L RC       LG MC V    SP
Sbjct: 118 KYGDSLYRCKCLKVAALGRMCTVIKRISP 146


>06_03_1181 - 28227746-28229115,28229130-28229307
          Length = 515

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -3

Query: 512 PVIPEGLGRGEVANYTTHISPSLVPSQ----V*QRVSLSPY-RAQIPNSGMILSRKTQYH 348
           P++ +   + ++   T +++ +L+PSQ    +   +S  P+   Q  N   +   +TQ H
Sbjct: 109 PILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHISFQPHIPIQTQNPNQVQYPQTQLH 168

Query: 347 LTRP 336
            T P
Sbjct: 169 QTHP 172


>06_01_0668 - 4882174-4884204
          Length = 676

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 400 RYGDRLTRCHTWDGTKLGEMCVV*FATSP 486
           +YGD L RC       LG MC V    SP
Sbjct: 118 KYGDSLYRCKCLKVAALGRMCTVIKRISP 146


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 343 VKWYWVFLLSII-PEFGICARYGDRLT 420
           +KWY+V +  ++ P  G C  YG  LT
Sbjct: 457 MKWYYVVIAYLLAPALGFCNAYGAGLT 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,005
Number of Sequences: 37544
Number of extensions: 263312
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)