Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C08
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    27   9.4  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   9.4  

>SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 276 YRKAIMSSQQLSPIIVSFLSNIVYVNPLLFYLINY--ISSI*YKNNYLSLFVSKTKRFSS 103
           Y   I +S Q     V FLS   YV PL+  +  Y  IS + +K +     +  ++ F S
Sbjct: 170 YCATIQTSTQAGRAYVLFLSVFGYVIPLVVLVALYARISCVVWKRDTSKNPLRTSRSFES 229

Query: 102 ILKLKLQI 79
           +LK + ++
Sbjct: 230 VLKTRKKV 237


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 390 NLCPIWRQAHPLSHLGRN*ARRNVCG 467
           N  P W +AHP  +L  N     +CG
Sbjct: 557 NTFPSWERAHPNRYLAHNGEINTICG 582


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 423  AGEPVAISGTNSKLRDDTE*KNP-IPLDPTRGS 328
            +GEP A  G + +L DD+E K+P  P D  +G+
Sbjct: 1175 SGEPFARKGEDLQLTDDSEVKSPKDPRDMLKGT 1207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,590,393
Number of Sequences: 59808
Number of extensions: 321621
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)