Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C08
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z79600-12|CAB70221.2|  415|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z75540-7|CAB70215.2|  415|Caenorhabditis elegans Hypothetical pr...    27   6.2  
X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.        27   8.1  
AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender...    27   8.1  

>U49941-2|AAB53873.1|  757|Caenorhabditis elegans Hypothetical
           protein K10B3.6a protein.
          Length = 757

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 477 SELHHTHFAELSSVPGVTAGEPVAISGTNSKLRDD 373
           ++L+  HF  +S   G +A  PVA+S T SK   D
Sbjct: 502 AQLNLLHFEHISRANGSSAESPVALSVTPSKTETD 536


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 279 FYRKAIMSSQ-QLSPIIVSFLSNIVYVNPLLFYLINYISS 163
           +YR  IM  +  LSPIIV  +  +  VNP +     YI+S
Sbjct: 226 YYRLKIMIYEPNLSPIIVDKIIRVAAVNPAMEIFEKYITS 265


>U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical
           protein C26B2.8 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 358 VFLLSIIPEFGICARYGDRLTR 423
           VF++ ++P  G+CARY   L +
Sbjct: 60  VFIMLLLPAAGLCARYNSHLVK 81


>Z79600-12|CAB70221.2|  415|Caenorhabditis elegans Hypothetical
           protein F37D6.6 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -2

Query: 465 HTHFAELSSVPGVTAGE-----PVAISGTNSKLRDDT 370
           HTH AE+S +P + AGE     P ++      L DD+
Sbjct: 190 HTHDAEMSKLPKILAGELPDRPPPSVPNATPPLPDDS 226


>Z75540-7|CAB70215.2|  415|Caenorhabditis elegans Hypothetical
           protein F37D6.6 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -2

Query: 465 HTHFAELSSVPGVTAGE-----PVAISGTNSKLRDDT 370
           HTH AE+S +P + AGE     P ++      L DD+
Sbjct: 190 HTHDAEMSKLPKILAGELPDRPPPSVPNATPPLPDDS 226


>X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = -2

Query: 309 VVALLYKLI*FYRKAIMSSQQLSPIIVSFLSNIVYVNPLLFYLINYISSI*YKNNYLSLF 130
           VV +L KL   Y+K   S  +   II ++++ I++     F     + +  + N++LS F
Sbjct: 5   VVPVLSKLFDDYQKTTSSKLK---IIDAYMTYILFTGIFQFIYCLLVGTFPF-NSFLSGF 60

Query: 129 VSKTKRFSSILKLKLQIN 76
           +S    F     L++Q+N
Sbjct: 61  ISTVTSFVLASCLRMQVN 78


>AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender
           against apoptoticdeath) homolog protein 1 protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = -2

Query: 309 VVALLYKLI*FYRKAIMSSQQLSPIIVSFLSNIVYVNPLLFYLINYISSI*YKNNYLSLF 130
           VV +L KL   Y+K   S  +   II ++++ I++     F     + +  + N++LS F
Sbjct: 5   VVPVLSKLFDDYQKTTSSKLK---IIDAYMTYILFTGIFQFIYCLLVGTFPF-NSFLSGF 60

Query: 129 VSKTKRFSSILKLKLQIN 76
           +S    F     L++Q+N
Sbjct: 61  ISTVTSFVLASCLRMQVN 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,778,071
Number of Sequences: 27780
Number of extensions: 251030
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)