Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C08
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.47 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 301 GDYVLRSRVRSPGRVKWYWVFLLSIIPEFGICARY 405
           GD     R    G   + W FLL ++ +   C RY
Sbjct: 443 GDGAAVKRKSREGSTTYLWEFLLKLLQDREYCPRY 477


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 358 VFLLSIIPEFGICARYGDRLTRCHTWDGTKLGEMCVV*FATSPL 489
           +FL    P F   A  GD   R        +   CV+ FATS L
Sbjct: 218 IFLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVIAFATSAL 261


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 349 WYWVFLLSIIPEFGICARYGDR--LTRC 426
           W+WV   +++P   +  RY     LT C
Sbjct: 179 WFWVTPFTVLPLLKVWGRYTTEGFLTTC 206


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 349 WYWVFLLSIIPEFGICARYGDR--LTRC 426
           W+WV   +++P   +  RY     LT C
Sbjct: 179 WFWVTPFTVLPLLKVWGRYTTEGFLTTC 206


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 336 RGSNPRPQNVVALLYKL 286
           R  NP+P+N V  L +L
Sbjct: 28  RNKNPQPKNAVCALNEL 44


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 207 YVNPLLFYLINYISSI 160
           Y N  L+Y INYI  I
Sbjct: 321 YNNKKLYYNINYIEQI 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,669
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)