Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C07
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   0.40 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.2  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   2.1  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   2.8  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   6.5  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   8.6  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -2

Query: 303 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALE----TCSSCVETFFQYVFSPRSLF 136
           +DEHL  Q +   E  ++P+    +T  P   DA      + SS  +   Q  FSPRS  
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTI 506

Query: 135 DNAVHLER 112
           D+  ++ +
Sbjct: 507 DSFSNISK 514


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 31  NDKRLDMLEIDSFVYKLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFDTTGTGFKSIE 210
           N K L+ + + SFV      K+N +++S E+  +IE+  + KN++   F     G KS E
Sbjct: 754 NYKSLESIGLTSFV------KDNKLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFE 807


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 154 KNILEKGFDTTGTGFKSIESWWYKSRLG 237
           KNI +  F+TTG G K +E   YK   G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 448 FTNNMKFTDVQVY-RKDYRLCLTPSRLDMSDMVMKK 552
           F N  K T  +VY RKD  +C TP        V+K+
Sbjct: 481 FGNGKKATSEEVYLRKDVVICKTPENYHKEGRVIKE 516


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 162 YVFSPRSLFDNAVHLERAADDVVLTSVEFIDEAIDF--EHVKAFVIDAHEAA 13
           +V   +  +D+++H  R   D++L   E ID A+ F  +H++  + + ++ +
Sbjct: 152 FVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 445 FFTNNMKFTDVQVYRKDYRLCL 510
           FF  N K+    +YRKDY LCL
Sbjct: 100 FFILNYKW----IYRKDYNLCL 117


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 216 PTLDALETCSSCVETFFQYVFSPRSLFDNAVHLER 112
           P+LD  ETCS+ V       FSP ++  N   + R
Sbjct: 27  PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 428 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 306
           +L +G +P+ +  K H LH++ Y  F +D    G+ T P  TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,981
Number of Sequences: 5004
Number of extensions: 51485
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)