Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C07
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55210.1 68418.m06882 expressed protein similar to unknown pr... 30 1.4
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 30 1.4
At2g05645.1 68415.m00604 hypothetical protein 30 1.4
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 29 1.8
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 1.8
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 29 1.8
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit... 29 2.4
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim... 28 4.2
At4g32940.1 68417.m04687 vacuolar processing enzyme gamma / gamm... 28 5.5
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 28 5.5
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 5.5
At5g39930.1 68418.m04842 expressed protein ; expression supporte... 27 7.3
At5g22850.1 68418.m02671 aspartyl protease family protein contai... 27 7.3
At3g28850.1 68416.m03599 glutaredoxin family protein 27 7.3
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 7.3
At3g01200.1 68416.m00026 expressed protein contains Pfam domain ... 27 9.6
>At5g55210.1 68418.m06882 expressed protein similar to unknown
protein (pir||T04913)
Length = 168
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 74 INSTLVRTTSSAARSRCTAL-SNRDRGLKTYWKKVSTQLEQVSRASRVGG 220
+ S L RT+S + TA+ S R R K W +VST V RAS+ G
Sbjct: 4 VGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNG 53
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 377 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 273
RQ+ + +VD + G + P L G+ T + G PP
Sbjct: 76 RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 218 HQLSMLLKPVPVVSKPFSNMFLVHG 144
H+ +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -3
Query: 353 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 174
VD+S + T P+ + +++ N + GN+ LCGKP ++L S L P P +S+
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP-PNISE 303
Query: 173 PFS 165
S
Sbjct: 304 TTS 306
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 404 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 270
G + H +HR + L +DI + G + P G+ I G P R
Sbjct: 52 GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 395 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 270
++H Q+ + +V+ +DG + P L G+ T + G PPR
Sbjct: 54 ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95
>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 311
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 376 RWSVCFDTMPLGFPFDREIYMPTFFTNNMKFTDVQVYRKDYRLCLTPSRLD 528
+W+V DT P+G FD I +F N + D Y Y + LD
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKENPDY-DNPSYNSKYGIYTEGCGLD 212
>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 190
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 197 KPVPVVSKPFSNMFLVHGLCSIT 129
K PV +K F NM +H LCS T
Sbjct: 99 KIFPVNNKYFENMIFIHALCSST 121
>At4g32940.1 68417.m04687 vacuolar processing enzyme gamma /
gamma-VPE nearly identical to SP|Q39119 Vacuolar
processing enzyme, gamma-isozyme precursor (EC 3.4.22.-)
(Gamma-VPE) {Arabidopsis thaliana}
Length = 494
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 429 NLYAYFLHKQHEVYRRASIQKGLSTMSNTIKIGHVRYGNEENDLTYLDSDMLMNWSYKD 605
NL LH+Q+E+ +R + G S S+ ++ G V + DL + N+++ D
Sbjct: 283 NLQTETLHQQYELVKRRTAPVGYSYGSHVMQYGDVGISKDNLDLYMGTNPANDNFTFAD 341
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 321 RYGFTIN*YVYYEGEIRLSVECMF 392
R G IN +VYYE +IR V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -2
Query: 303 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 136
DD +++ + + S ++PV K A+ P T D+L + + ++ F F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168
Query: 135 DNAVHLERAADDVVLTS 85
+ E AA D + ++
Sbjct: 169 --SAGFEPAAKDSLFSA 183
>At5g39930.1 68418.m04842 expressed protein ; expression supported
by MPSS
Length = 423
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 442 TFFTNNMKFTDVQVYR-KDYRL 504
T +T +KF+DVQVYR D+R+
Sbjct: 315 TVYTKTVKFSDVQVYRIGDFRV 336
>At5g22850.1 68418.m02671 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 493
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 270
L ++D +DG P + G+ T + G PPR
Sbjct: 61 LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92
>At3g28850.1 68416.m03599 glutaredoxin family protein
Length = 428
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 402 HCVETYTPPTSVSRLHSRH 346
HC Y+PP V R HS H
Sbjct: 14 HCRRGYSPPVDVQRSHSVH 32
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 284 GKPPRVPRGNRSLCGKP--RRLLYH 216
GKPP GN SLCGK + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210
>At3g01200.1 68416.m00026 expressed protein contains Pfam domain
PF03618: Domain of unknown function (DUF299)
Length = 377
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 13 GRLMSINDKRLDMLEIDSFVYKLDTG--KNNIVRSSLEMHGVIE--QRPWTKNILEKGFD 180
GR+ ++ND +E F K D G N+ ++ + + GV + P + I +KG+
Sbjct: 202 GRVKTLNDAYFKRIEAIEFTIKQDDGTLPENLSKADIVLVGVSRTGKTPLSTYIAQKGYK 261
Query: 181 TTGTGF 198
F
Sbjct: 262 VANVPF 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,456
Number of Sequences: 28952
Number of extensions: 272372
Number of successful extensions: 770
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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