Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C06
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 83 2e-17
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 56 4e-09
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 40 3e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 39 4e-04
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 28 1.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 1.9
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 3.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 5.8
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 7.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 7.7
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 7.7
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 83.4 bits (197), Expect = 2e-17
Identities = 65/175 (37%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = +2
Query: 2 SEELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMA 181
+ +L +E+ EWI N D+ + L+ G +LC++ ++ S M
Sbjct: 2 TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57
Query: 182 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGGF--GK-P 349
F MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S R A GK
Sbjct: 58 FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVR 117
Query: 350 SIGPKEAEKNVRNFSEEQLRA-GQGVISLQYGSNKGATQ--SGINFGNTRTHVGN 505
+GPK AEK R FS +Q R +GV SLQYGS TQ I F R GN
Sbjct: 118 GLGPKLAEKKPRVFSAQQQREFREGVNSLQYGSFDMPTQGTEKIAFSRRRDPTGN 172
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 56.0 bits (129), Expect = 4e-09
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +2
Query: 20 ESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVS-KMAFKCME 196
E+ +WI G G F + L++G +L LV QP+ + K+ S ++ F+ +
Sbjct: 46 EAKKWIEECLGTD---LGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 197 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 319
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 20 ESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVS-KMAFKCME 196
E+ +W+ E N ++D+F + L +G +LC+L P + +++ +
Sbjct: 69 EAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTV 125
Query: 197 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 319
+NAF +G+ F+T DL R N+ V+ CL +L
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Frame = +2
Query: 2 SEELAQESLEWIR-VITGEPE-----NISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKV 163
+EE +E ++ I V+ G+P+ I+ + F++ KDG +L KL+N P+ + +
Sbjct: 111 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDER 170
Query: 164 NVSKMA-------FKCMENINAFLEAARQLG 235
++K FKC+EN N + +A+ +G
Sbjct: 171 VLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 32.3 bits (70), Expect = 0.051
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +2
Query: 62 NISGDMDNFYEVLKDGTLLCKLVNTIQPNMV--KKVNVS------KMAFKCMENINAFLE 217
+++ + +F+ L+DG +L + + I PN V KKVN + M FK +EN N ++
Sbjct: 399 DVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVD 458
Query: 218 AARQLG 235
+ G
Sbjct: 459 LGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/76 (21%), Positives = 30/76 (39%)
Frame = +2
Query: 194 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGGFGKPSIGPKEAE 373
E + AF+E A+Q G+P E W+ + + +L + + +
Sbjct: 131 EELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCW 190
Query: 374 KNVRNFSEEQLRAGQG 421
+NVR + G+G
Sbjct: 191 RNVRFILSDASVPGEG 206
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 1.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 276 SHRSTVWNVS*AGTPSCRAASRNALMFSM 190
+++S +W + +G P+C+ + L+FS+
Sbjct: 946 NYKSGIWKLVLSGLPNCKTVFEHLLLFSL 974
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 408 LSCSSEKFLTFFSASLGPIDGLPKPPAFLPND 313
++ +S+ +T +S G + G +PP LPND
Sbjct: 181 IAWASDLGITVYSTEFGKVLGRLEPPKRLPND 212
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 84 LSISPEMFSGSPVITRIHSNDSWASSS 4
L +SPE+FS + V RI + W S+
Sbjct: 372 LGVSPELFSQNLVRPRIKAGHEWVISA 398
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 168 YPRWRSNAWKTL 203
YPRW N WK L
Sbjct: 24 YPRWTFNKWKAL 35
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 189 AWKTLTHSSRQRGNSACRLKK 251
AWK L RQRGN ++K
Sbjct: 169 AWKMLGECHRQRGNGRVNIEK 189
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +3
Query: 165 TYPRWRSNAWKTLTHSSRQRGNSACRLKKHSKPSIYGKDRTS 290
+Y W+ WK L R+ CR + S Y + +T+
Sbjct: 444 SYRSWKKEYWKELLEEGRKFERQLCR-NVFGRSSFYVQQKTA 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,376
Number of Sequences: 5004
Number of extensions: 54525
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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