Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C06
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 175 1e-44
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 175 1e-44
U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protei... 113 6e-26
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 107 7e-24
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 101 4e-22
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 45 4e-05
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 45 4e-05
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 45 4e-05
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 38 0.004
U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical pr... 32 0.33
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 32 0.33
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 32 0.33
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 32 0.33
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 32 0.33
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 32 0.33
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 32 0.33
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 32 0.33
U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein. 31 0.57
U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. 31 0.57
U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein. 31 0.57
U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein. 31 0.57
U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein. 31 0.57
AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated... 31 0.57
AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated... 31 0.57
AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated... 31 0.57
U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.76
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical... 29 2.3
Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical pr... 29 3.1
U96695-1|AAB57697.1| 491|Caenorhabditis elegans deoxyuridinetri... 29 3.1
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p... 28 5.3
Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical p... 28 5.3
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 28 5.3
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 28 5.3
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ... 28 5.3
AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical ... 28 5.3
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 28 5.3
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 28 5.3
Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 9.3
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 9.3
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 9.3
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 27 9.3
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 9.3
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 9.3
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 175 bits (427), Expect = 1e-44
Identities = 87/163 (53%), Positives = 117/163 (71%), Gaps = 1/163 (0%)
Frame = +2
Query: 5 EELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAF 184
+ LA E L+W++ +TG+ + GD DN +V +DG+LLC L N+++P VKKVN S MAF
Sbjct: 29 KNLAGEILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAF 88
Query: 185 KCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA-GGFGKPSIGP 361
K MENI+ FL+ A + V E FQTVDL+E Q+ N+V+ICL SL RK+ FG+ +GP
Sbjct: 89 KKMENISFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKNFGRSGLGP 147
Query: 362 KEAEKNVRNFSEEQLRAGQGVISLQYGSNKGATQSGINFGNTR 490
KEA+ + R +++EQL+AG VI LQ GSNKGAT SG+N GNTR
Sbjct: 148 KEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATASGLNMGNTR 190
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 175 bits (427), Expect = 1e-44
Identities = 87/163 (53%), Positives = 117/163 (71%), Gaps = 1/163 (0%)
Frame = +2
Query: 5 EELAQESLEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAF 184
+ LA E L+W++ +TG+ + GD DN +V +DG+LLC L N+++P VKKVN S MAF
Sbjct: 29 KNLAGEILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAF 88
Query: 185 KCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKA-GGFGKPSIGP 361
K MENI+ FL+ A + V E FQTVDL+E Q+ N+V+ICL SL RK+ FG+ +GP
Sbjct: 89 KKMENISFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKNFGRSGLGP 147
Query: 362 KEAEKNVRNFSEEQLRAGQGVISLQYGSNKGATQSGINFGNTR 490
KEA+ + R +++EQL+AG VI LQ GSNKGAT SG+N GNTR
Sbjct: 148 KEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATASGLNMGNTR 190
>U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protein 3
protein.
Length = 142
Score = 113 bits (273), Expect = 6e-26
Identities = 56/107 (52%), Positives = 74/107 (69%)
Frame = +2
Query: 26 LEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENIN 205
LEWI+ ++GE + SG+ DNF+ +LKDGTLLCK N I+ +KKV F CMENIN
Sbjct: 31 LEWIKKLSGENISTSGERDNFHNLLKDGTLLCKAANGIEAGSIKKVQKPISTFACMENIN 90
Query: 206 AFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGGFGK 346
AF+E A++ GVP +ETFQ+V+L E ++L SV + L SLGR GK
Sbjct: 91 AFVEFAKKQGVPNEETFQSVELVEGRDLFSVCVTLLSLGRVLQKAGK 137
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 107 bits (256), Expect = 7e-24
Identities = 58/118 (49%), Positives = 72/118 (61%)
Frame = +2
Query: 26 LEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENIN 205
LEWIR +T E + DNF E LKDG LCKLVN I+ VKK+ F C+ENIN
Sbjct: 34 LEWIRDLTKEDFDCEASRDNFREQLKDGQRLCKLVNAIKAGSVKKIMKPISNFNCLENIN 93
Query: 206 AFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAGGFGKPSIGPKEAEKN 379
F AAR LGV +ETFQ+VDL++ ++L SV + LQSL RK G PK+ K+
Sbjct: 94 QFSTAARSLGVKDEETFQSVDLFDGRDLFSVTVTLQSLARKVEKLG--ITPPKQVSKD 149
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 101 bits (242), Expect = 4e-22
Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 9/165 (5%)
Frame = +2
Query: 8 ELAQESLEWIRVITGEPENIS----GDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVS- 172
E A E L+WI +TGE + + +LKDG +LCKL+ + P+ N
Sbjct: 25 EEAIEVLKWIENVTGERFSFDVTTCESSTDVSNLLKDGVMLCKLIEKLDPSCRVVYNKKP 84
Query: 173 KMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLG----RKAGGF 340
KMAF MENI+ FL AA+Q GV FQTVDL+E + V+ CL+ L ++
Sbjct: 85 KMAFPMMENISNFLAAAKQFGVMEISCFQTVDLYENKQCYKVIECLRLLAAVAQSRSSHL 144
Query: 341 GKPSIGPKEAEKNVRNFSEEQLRAGQGVISLQYGSNKGATQSGIN 475
P+ K A+ + R F E +R G+ VI LQYG+NK A+Q G++
Sbjct: 145 EHPAWVVKLAQSSPRQFPEAVMRRGEMVIPLQYGTNKCASQKGMS 189
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 32 WIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSK----MAFKCMEN 199
W+R + + +G M F VL+DG LLC+L NT+ PN + + + + F C N
Sbjct: 14 WLRDMKVLTTDKNGTMLEFASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNN 73
Query: 200 INAF-LEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 319
IN F + + + F DL+ V+ L L
Sbjct: 74 INYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFL 114
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 32 WIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSK----MAFKCMEN 199
W+R + + +G M F VL+DG LLC+L NT+ PN + + + + F C N
Sbjct: 46 WLRDMKVLTTDKNGTMLEFASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNN 105
Query: 200 INAF-LEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 319
IN F + + + F DL+ V+ L L
Sbjct: 106 INYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFL 146
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 32 WIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSK----MAFKCMEN 199
W+R + + +G M F VL+DG LLC+L NT+ PN + + + + F C N
Sbjct: 46 WLRDMKVLTTDKNGTMLEFASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNN 105
Query: 200 INAF-LEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 319
IN F + + + F DL+ V+ L L
Sbjct: 106 INYFAMFCKTYFNLEDADLFTAEDLYYMNGFQKVLKTLSFL 146
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +2
Query: 71 GDMDNFYEVLKDGTLLCKLVNTIQP---NMVKKVNVSKMAFKCMENINAFLEAARQLGVP 241
GD+ +F L DG LCK +N + P ++ + S + N++ FL+ R++GVP
Sbjct: 540 GDI-SFSLQLSDGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVP 598
Query: 242 AQETFQTVDLWERQNLNSV 298
+D+ ++N V
Sbjct: 599 ETTLCSQMDIISKRNPQKV 617
>U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical
protein T25F10.6a protein.
Length = 406
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI 472
EE+ RA G++ LQ G+NK A+Q+G+
Sbjct: 191 EEKARASDGIVPLQSGTNKLASQAGM 216
Score = 31.5 bits (68), Expect = 0.43
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 275 ERQNLNSVVICLQSLGRK-AGGFGKPSIGPKEAEKNVRNFSEEQLRAGQGVISLQYGSNK 451
E+ + ++ LQS K A G IG +VR + +Q R QG I LQ G+NK
Sbjct: 192 EKARASDGIVPLQSGTNKLASQAGMTGIGMPRIV-DVRR-TNDQDRDSQGFIHLQMGTNK 249
Query: 452 GATQSGI-NFGNTRTHV 499
A Q+G+ FG R ++
Sbjct: 250 FANQAGMTGFGMPRHNI 266
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 392 SEEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
++E+L +G+I +Q GSNK A+Q G+ FG R
Sbjct: 92 TKEKLMRSEGIIPIQAGSNKYASQKGMTGFGVPR 125
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 65 ISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENINAFLEAAR 226
+S + + Y ++DG +L +L+ + + K KM C+EN+ L+ R
Sbjct: 57 VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 65 ISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENINAFLEAAR 226
+S + + Y ++DG +L +L+ + + K KM C+EN+ L+ R
Sbjct: 57 VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 5 EELAQESL--EWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTI--QPNMVKKVNVS 172
+E AQ++ WI E + SG +++ +E ++DG LLC L+ + + V K VS
Sbjct: 21 DEKAQKNTFTRWINFHL-EEHSSSGRIEDLFEDIRDGVLLCHLIEVLTGEALAVHKGRVS 79
Query: 173 KMAFKCMENINAFLEAARQLGV 238
K + N+ L R+ G+
Sbjct: 80 KRVHH-IANLTTALTVLRRRGL 100
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 65 ISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENINAFLEAAR 226
+S + + Y ++DG +L +L+ + + K KM C+EN+ L+ R
Sbjct: 57 VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 65 ISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENINAFLEAAR 226
+S + + Y ++DG +L +L+ + + K KM C+EN+ L+ R
Sbjct: 57 VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 65 ISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKMAFKCMENINAFLEAAR 226
+S + + Y ++DG +L +L+ + + K KM C+EN+ L+ R
Sbjct: 57 VSCKVQDLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 5 EELAQESL--EWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTI--QPNMVKKVNVS 172
+E AQ++ WI E + SG +++ +E ++DG LLC L+ + + V K VS
Sbjct: 21 DEKAQKNTFTRWINFHL-EEHSSSGRIEDLFEDIRDGVLLCHLIEVLTGEALAVHKGRVS 79
Query: 173 KMAFKCMENINAFLEAARQLGV 238
K + N+ L R+ G+
Sbjct: 80 KRVHH-IANLTTALTVLRRRGL 100
>U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 120 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 256 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 286
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 12 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 57
>U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein.
Length = 565
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 328 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 360
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 464 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 494
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 220 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 265
>U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 137 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 169
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 273 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 303
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 29 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 74
>U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 120 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 256 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 286
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 12 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 57
>U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 137 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 169
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 273 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 303
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 29 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 74
>AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated
protein 87, isoform c protein.
Length = 544
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 307 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 339
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 443 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 473
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 199 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 244
>AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated
protein 87, isoform a protein.
Length = 565
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 328 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 360
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 464 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 494
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 220 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 265
>AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated
protein 87, isoform b protein.
Length = 374
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 395 EEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
EE++R +G++ LQ G+NK +Q G+ FG R
Sbjct: 137 EEKIRMSEGIVRLQAGTNKYDSQKGMTGFGTGR 169
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 401 QLRAGQGVISLQYGSNKGATQSG-INFGNTR 490
Q R QG++ LQ G+N+ A+Q+G I FG R
Sbjct: 273 QNRKSQGMVRLQSGTNRFASQAGMIGFGTCR 303
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +2
Query: 374 KNVRNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFG---NTRTHV 499
K V ++ QLR G+I Q G NKG +Q + NFG NT T V
Sbjct: 29 KRVGRWTLAQLRQTDGIIPSQAGWNKGDSQKLMTNFGTPRNTNTRV 74
>U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical
protein T25F10.6b protein.
Length = 301
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 392 SEEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
++E+L +G+I +Q GSNK A+Q G+ FG R
Sbjct: 92 TKEKLMRSEGIIPIQAGSNKYASQKGMTGFGVPR 125
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 383 RNFSEEQLRAGQGVISLQYGSNKGATQSGI-NFGNTR 490
++ EE + +G++ LQ G+NK A+Q G+ FG R
Sbjct: 241 KDIEEELKQKSEGIVPLQSGTNKLASQRGMTGFGTPR 277
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 383 RNFSEEQLRAGQGVISLQYGSNKGATQSGI 472
+ ++ EQL+ G +S Q G+NK TQ G+
Sbjct: 15 KRWTLEQLKGGNTFLSQQAGTNKFETQKGM 44
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 519 VGNNVFPTCVLVLPKLMPLCVAPLFEP 439
V V PT VLP + P+ +APLFEP
Sbjct: 249 VVQTVVPTLFFVLP-IAPILIAPLFEP 274
>AL032657-13|CAB76744.1| 87|Caenorhabditis elegans Hypothetical
protein Y47H9C.14 protein.
Length = 87
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 186 NAWKTLTHSSRQRGNSACRL-----KKHSKPSIYGKDRTSIRLLSAFNR 317
NAWK H++ R N A R KKH SI G R I+ L F +
Sbjct: 11 NAWKPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRK 59
>Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical
protein K07A1.2 protein.
Length = 491
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 308 LQSLGRKAGGFGKPSIGPKEAEKNVRNFSEEQLRAGQGVISLQ 436
L++ R AGGFG EAE ++ EQ++ +++Q
Sbjct: 309 LENTDRGAGGFGSTGQNTMEAEPALKKSKTEQIKTSATSVTIQ 351
>U96695-1|AAB57697.1| 491|Caenorhabditis elegans
deoxyuridinetriphosphatase protein.
Length = 491
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 308 LQSLGRKAGGFGKPSIGPKEAEKNVRNFSEEQLRAGQGVISLQ 436
L++ R AGGFG EAE ++ EQ++ +++Q
Sbjct: 309 LENTDRGAGGFGSTGQNTMEAEPALKKSKTEQIKTSATSVTIQ 351
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 5 EELAQES--LEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKM 178
EEL+ L W + T N++ + NF+ KDG C L++ +P+++ + K
Sbjct: 148 EELSARDGLLLWCQRKTAPYNNVN--VQNFHNSWKDGLAFCALIHRHRPDLLDYSQLHK- 204
Query: 179 AFKCMENIN-AFLEAARQLGVP 241
+ N+N AF A + L +P
Sbjct: 205 -GDPIHNLNLAFDIAEKHLDIP 225
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 5 EELAQES--LEWIRVITGEPENISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSKM 178
EEL+ L W + T N++ + NF+ KDG C L++ +P+++ + K
Sbjct: 148 EELSARDGLLLWCQRKTAPYNNVN--VQNFHNSWKDGLAFCALIHRHRPDLLDYSQLHK- 204
Query: 179 AFKCMENIN-AFLEAARQLGVP 241
+ N+N AF A + L +P
Sbjct: 205 -GDPIHNLNLAFDIAEKHLDIP 225
>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 62 NISGDMDNFYEVLKDGTLLCKLVNTI 139
NISGD+ N + + GTLL LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493
>Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 62 NISGDMDNFYEVLKDGTLLCKLVNTI 139
NISGD+ N + + GTLL LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 385 KLLRGTTESRSRCHFPTIRFKQRRHTKRHQFRQHEN 492
++L GTT SR+R R KQ++ +RH R H N
Sbjct: 918 EVLAGTTVSRAR------REKQKKRNRRHDVRFHSN 947
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 385 KLLRGTTESRSRCHFPTIRFKQRRHTKRHQFRQHEN 492
++L GTT SR+R R KQ++ +RH R H N
Sbjct: 918 EVLAGTTVSRAR------REKQKKRNRRHDVRFHSN 947
>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 62 NISGDMDNFYEVLKDGTLLCKLVNTI 139
NISGD+ N + + GTLL LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493
>AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 62 NISGDMDNFYEVLKDGTLLCKLVNTI 139
NISGD+ N + + GTLL LV TI
Sbjct: 468 NISGDLANPQQAIPLGTLLAILVTTI 493
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 74 DMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVS 172
+M++ YE + DG LC L++ +P+ + ++S
Sbjct: 197 EMEDLYEDISDGQCLCALLHWYRPHEMPVADIS 229
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 74 DMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVS 172
+M++ YE + DG LC L++ +P+ + ++S
Sbjct: 197 EMEDLYEDISDGQCLCALLHWYRPHEMPVADIS 229
>Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical
protein F56G4.6 protein.
Length = 765
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 5 EELAQESLEWIRVITGEPE---NISGDMDNFYEVLKDGTLLCKLVNTIQPNMVKKVNVSK 175
E+LA E+LE I E E +++G M+N + D L C+ + I M +K ++ K
Sbjct: 277 EKLANETLEQFLQIQHESEEYPSVAGVMENLSKQNIDERLFCQKICLINDIMHEKYSILK 336
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 27.1 bits (57), Expect = 9.3
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +1
Query: 439 RFKQRRHTKRHQFRQHENTCREHIIAYIK 525
R+KQ+ +T+R+ F ++ + CR+ + ++
Sbjct: 96 RYKQQEYTRRNDFMKYCHVCRKKTVGKLR 124
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 GFGKPSIGPKEAEKNVRNF-SEEQLRAGQGVISLQYGSNKGATQSGINFGNTRTHVGNTL 511
GFG P GP ++ + NF ++ Q G + YG + NF +GN L
Sbjct: 1345 GFGMPPNGPSSVQR-LNNFVNQSQFGPNNGHPTPPYGYMQQMIPQSPNFNQQYNGMGNQL 1403
Query: 512 L 514
+
Sbjct: 1404 M 1404
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 GFGKPSIGPKEAEKNVRNF-SEEQLRAGQGVISLQYGSNKGATQSGINFGNTRTHVGNTL 511
GFG P GP ++ + NF ++ Q G + YG + NF +GN L
Sbjct: 1345 GFGMPPNGPSSVQR-LNNFVNQSQFGPNNGHPTPPYGYMQQMIPQSPNFNQQYNGMGNQL 1403
Query: 512 L 514
+
Sbjct: 1404 M 1404
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 537 FAHWFYVGNNVFPTCVLVLPKLMPLCVAPLFEPYCREM 424
F +W+++ +N CV VLP C+A E + + M
Sbjct: 601 FVYWYFIDSNFDKICVSVLPS---FCLAAGEELFAKNM 635
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 537 FAHWFYVGNNVFPTCVLVLPKLMPLCVAPLFEPYCREM 424
F +W+++ +N CV VLP C+A E + + M
Sbjct: 601 FVYWYFIDSNFDKICVSVLPS---FCLAAGEELFAKNM 635
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 537 FAHWFYVGNNVFPTCVLVLPKLMPLCVAPLFEPYCREM 424
F +W+++ +N CV VLP C+A E + + M
Sbjct: 601 FVYWYFIDSNFDKICVSVLPS---FCLAAGEELFAKNM 635
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 537 FAHWFYVGNNVFPTCVLVLPKLMPLCVAPLFEPYCREM 424
F +W+++ +N CV VLP C+A E + + M
Sbjct: 601 FVYWYFIDSNFDKICVSVLPS---FCLAAGEELFAKNM 635
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 GFGKPSIGPKEAEKNVRNF-SEEQLRAGQGVISLQYGSNKGATQSGINFGNTRTHVGNTL 511
GFG P GP ++ + NF ++ Q G + YG + NF +GN L
Sbjct: 1345 GFGMPPNGPSSVQR-LNNFVNQSQFGPNNGHPTPPYGYMQQMIPQSPNFNQQYNGMGNQL 1403
Query: 512 L 514
+
Sbjct: 1404 M 1404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,921
Number of Sequences: 27780
Number of extensions: 317846
Number of successful extensions: 956
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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