Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C03
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   0.96 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   2.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   2.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   3.9  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   6.7  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   6.7  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    24   8.9  

>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 62  SSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLM 199
           S  H+ N + L + +   +    K  YT +KD ++V SP G+   M
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLV-SPTGLQSRM 343


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 278 PRYNLHCLKTCRSPHDYLHRRQLCTEALAS 189
           P++N HCLK C      L +   C  A  S
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFCLAATVS 740


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 107 DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 226
           D +S+    +T   S  +N++   +GV   +LL  +G+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 47  RASVYSSDHEYNRTALGDAIDKTSLQFLKE----TYTSSKDKNVVSSPLGVMMLMLLYKA 214
           +ASV  +   Y+R AL    + + +  L      T TS K + +++   G+M LM + +A
Sbjct: 13  KASVTINTVLYDRRALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRLMNILRA 72

Query: 215 GAGE 226
           G G+
Sbjct: 73  GRGQ 76


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 47   RASVYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 226
            R   Y+S  E++  +  +   K S++  K  +TS +D+ ++ +    +++  +Y  G   
Sbjct: 860  RKDRYASVEEFDYFSSTEHASKRSVKRFKNDFTSDEDETLIRA----VVITQIYYGGTNR 915

Query: 227  GSRAE-IDKFSGNGDYSGVANPYISL 301
              + E + K   N D   +   Y+S+
Sbjct: 916  LIKWEAVQKCFPNRDIYALTRRYLSI 941


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 243 STSFQAMEIIAG-LPIRTSA*VKRSRR*IRITSLWPIKSTSDINILWMRNSRSLSVSTKR 419
           ST F   +  A  +  RT   VKR +    + ++W   S+ D    W +N R ++ ST  
Sbjct: 238 STGFYKQDQSASYMKPRTGNTVKRGQM---VDAIWLTMSSKDKMATWKKNRRVMAYSTVG 294

Query: 420 S*NY 431
           + +Y
Sbjct: 295 TPDY 298


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 136 FLKKLQRSFVNGIA*GCPVVLV 71
           +LKK+ RSF NG   G P   V
Sbjct: 66  YLKKVHRSFKNGFRSGKPAAAV 87


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 143 YTFP*ETAKKFCQWHRLRLSCCTRGQRNKRSHV 45
           Y F  E       W  L LS C  G  +K +H+
Sbjct: 412 YNFKTEDTNVLRYWKTLALSTCENGIEDKYTHL 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,291
Number of Sequences: 5004
Number of extensions: 36537
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)