Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C03
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           29   1.2  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    29   1.2  
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073...    29   1.6  
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091     29   2.2  
03_06_0584 + 34909800-34910261                                         28   3.8  
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064...    27   5.0  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    27   6.6  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 236 HDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP 132
           H+YLH+ +   E + +SRLMV+   +C ++ +  P
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNCVTLPHRNP 413


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -3

Query: 234 RLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSE 64
           R+P P P L+ ++S+I         L+F   Y +   C + + +  P+   L  W +
Sbjct: 40  RIPLPGPPLFYNVSLIMSRRSRCVLLAFGYAYPAY-ECYKTVELNKPEIEQLIFWCQ 95


>10_08_1040 +
           22503641-22503681,22503838-22504299,22506952-22507361,
           22507484-22507640,22507718-22507937,22508053-22508106,
           22508193-22508272,22508359-22508636,22509193-22509515,
           22509590-22509853,22510453-22510860
          Length = 898

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 269 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTF 135
           NL+   +C   H  + RRQL T+   SS    +  +S PS  Y+F
Sbjct: 799 NLNSSSSCGEEHWRMKRRQLETQQDESSYSAKQKSYSYPSTSYSF 843


>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
          Length = 889

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 308 FYLS*CTDWQPRYNLHCLKTC 246
           + L  CTD+ P+Y  HC  +C
Sbjct: 296 YLLDGCTDYNPKYKEHCSTSC 316


>03_06_0584 + 34909800-34910261
          Length = 153

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 258 PENLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYV 136
           P   + S +L   A A Y+ + +ITP G++  F + DD Y+
Sbjct: 42  PSLKASSKKLDVSAMATYK-VKLITPEGQEHEFEAPDDTYI 81


>04_04_1036 +
           30305548-30305588,30305710-30305761,30306408-30306487,
           30307035-30307110,30307169-30307252,30307356-30307501,
           30307608-30307826,30308180-30308271,30308677-30308867,
           30309100-30309706,30309811-30310004
          Length = 593

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 86  TALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFSGNG 265
           T LG   DK  ++ ++E   S++DK V  S  G+         G+   S      FSG  
Sbjct: 136 TILGLINDKEKIKSVREKAASNRDKYVGLSSTGITYKSSSASFGSNYSSGERYGSFSGTR 195

Query: 266 DYSGVANPY 292
           +     + Y
Sbjct: 196 EGDSYGDSY 204


>09_02_0071 -
           3877231-3877807,3880716-3880722,3880723-3881000,
           3881287-3883916
          Length = 1163

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 261 LPENLSISARLPSPAPALYRSISIITPNGEDTTF 160
           + +NL+I++  P  + ++YR  + I+P  E T+F
Sbjct: 878 IEQNLAIASLQPGVSYSIYRETTTISPAAEITSF 911


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,681
Number of Sequences: 37544
Number of extensions: 244465
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)