Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C03
(437 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 29 1.7
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 28 3.9
SB_347| Best HMM Match : TIR (HMM E-Value=0.0019) 28 3.9
SB_10120| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 28 3.9
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_25139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42) 27 6.8
SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27) 27 6.8
SB_712| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 264 PLPENLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 130
PLP + + + PS +PA Y S + +T G +TF D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 266 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGHKY-TLDEKFTITVRQY 412
+YS ++ Y++LSK +S ++ +Y T++ N + Y TL + + + Y
Sbjct: 19 NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69
>SB_347| Best HMM Match : TIR (HMM E-Value=0.0019)
Length = 295
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 150 DDVYVSLRNCKEVLSMASPKAVLLYSWSEE*TLARCRPR 34
D++Y ++ C V+++ SP+ + S E+ +A C R
Sbjct: 50 DEIYTAMARCARVVTLLSPEYLSSVSCIEQYNMAMCISR 88
>SB_10120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 150 DDVYVSLRNCKEVLSMASPKAVLLYSWSEE*TLARCRPR 34
D++Y ++ C V+++ SP+ + S E+ +A C R
Sbjct: 263 DEIYTAMARCARVVTLLSPEYLSSVSCIEQYNMAMCISR 301
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 266 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGHKY-TLDEKFTITVRQY 412
+YS ++ Y++LSK +S ++ +Y T++ N + Y TL + + + Y
Sbjct: 19 NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +2
Query: 266 DYSGVANPYISLSKTFSEMNPDYFTMA 346
+YS ++ Y++LSK +S ++ +Y T++
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLS 138
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +2
Query: 266 DYSGVANPYISLSKTFSEMNPDYFTMA 346
+YS ++ Y++LSK +S ++ +Y T++
Sbjct: 126 NYSTLSKNYLTLSKNYSTLSKNYLTLS 152
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -1
Query: 269 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP*ETAKK 114
N C +TCR+P +Y +LC S K ++ P F AKK
Sbjct: 620 NAQCRQTCRTPPNY---AELCGSLWISRITRKKPNYALPHKRVAFSNSQAKK 668
>SB_25139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 38 GLQRASVYSSDHEYNRTALGDAID-KTSLQFLKETYTSSKDKNVVSSPLGVM 190
G++ SV + ++E + + D + S+ +K+T + KDKN +S +G+M
Sbjct: 48 GMKINSVINRNYEKTISNIKDENEYPPSIGIMKKTISKIKDKNECTSSIGIM 99
>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
Length = 1371
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 95 GDAIDKTSLQFLKETYTSSKDKNVV 169
G IDK+ ++ +K+T +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284
>SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)
Length = 665
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 95 GDAIDKTSLQFLKETYTSSKDKNVV 169
G IDK+ ++ +K+T +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284
>SB_712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 251 FSGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYVGHKYTLDEKFTITVRQY 412
FS Y + Y ++ + + P YFT+ + + G +T+ ++ QY
Sbjct: 72 FSVAPKYFTIPPQYFTVPPQYFTVPPQYFTVPPQYFTGQYFTIPPQYFTVPPQY 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,304
Number of Sequences: 59808
Number of extensions: 276352
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -