Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C03
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY525079-1|AAS13528.1|  359|Caenorhabditis elegans serine or cys...    32   0.21 
AF026209-15|AAB71270.1|  359|Caenorhabditis elegans Serpin prote...    32   0.21 
Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AY525079-1|AAS13528.1|  359|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 359

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +2

Query: 128 LKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFSGNGDYSGVANPYISLSK 307
           LK   T     +VV SPL + + + L  AGA   ++ E++   G    S +   +  L +
Sbjct: 13  LKLLATLPHSGSVVLSPLSISLGLALIHAGACGSTQKELEDVLGG---SRIFEEFSGLME 69

Query: 308 TFSEMNPDYFT-MANKIYVGHKYTLDEKFTITVRQ 409
              + +    T + N+++V   YT+ + +  TV +
Sbjct: 70  AVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEK 104


>AF026209-15|AAB71270.1|  359|Caenorhabditis elegans Serpin protein
           2 protein.
          Length = 359

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +2

Query: 128 LKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFSGNGDYSGVANPYISLSK 307
           LK   T     +VV SPL + + + L  AGA   ++ E++   G    S +   +  L +
Sbjct: 13  LKLLATLPHSGSVVLSPLSISLGLALIHAGACGSTQKELEDVLGG---SRIFEEFSGLME 69

Query: 308 TFSEMNPDYFT-MANKIYVGHKYTLDEKFTITVRQ 409
              + +    T + N+++V   YT+ + +  TV +
Sbjct: 70  AVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEK 104


>Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical
           protein C36E8.4 protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 107 DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRAEIDKFSGNGDYS 274
           DK+ L     T   S D N +  P   M     Y +  G G   E +K S +G YS
Sbjct: 403 DKSGLPMTILTIPLSGDNNSLPPPCLSMEASTAYPSPRGSGEYEEYEKISDDGFYS 458


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = -1

Query: 290 TDWQPRYNLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHS 159
           +++  +++++C K C    +    ++L   +L +S L +K  H+
Sbjct: 282 SEFDKKFSIYCPKACEELRNVQSSKELECTSLCTSELSIKVLHN 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,913
Number of Sequences: 27780
Number of extensions: 208046
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)