Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C02
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 52 2e-07
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 31 0.71
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 2.9
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08) 28 3.8
SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23) 28 3.8
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47) 27 6.6
SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0) 27 6.6
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4) 27 8.8
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 8.8
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 52.4 bits (120), Expect = 2e-07
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Frame = +3
Query: 57 VVVTGAGGFLGSRVADFLLGSDSPLHVTELVLSG-SRLPASRDDPRVRLLAVDLSKPGAG 233
V+VTG G+LGS + LL + V + L G S L +PR++++ D+ G
Sbjct: 143 VLVTGGAGYLGSSLVPILLDQGYKVTVYDRFLWGISSLYPCASNPRLQIINGDILDVGHL 202
Query: 234 DQLIDANTDVFFHMAAVVSGHA-EAEFDYGFKVNFDATRELLETARKRAPNLKFVYTSAV 410
Q I + D H+A++V A E + +VN TR +++ P VY S
Sbjct: 203 SQCI-SECDAVIHLASIVGYPACEKDPQKATEVNEQGTRNVVDAL---LPGQPLVYASTG 258
Query: 411 AVFGGDLPSVVDDTIAVMPQNSYGTAKAISE 503
+ +G + ++ + P YG KA E
Sbjct: 259 SCYGAIEDGLCTESTPISPLTLYGKTKANGE 289
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 30.7 bits (66), Expect = 0.71
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 460 TAIVSSTTEGRS---PPKTATALV*TNFKLGARFLAVSKSSRVASKLT 326
TA +SSTT ++ PP TAT + NFK A + S ASK T
Sbjct: 1611 TASISSTTSKKTDTAPPSTATDMAKNNFKFSAPAPKIFNPSIPASKKT 1658
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +3
Query: 276 AAVVSGHAEAEFDYGFKVNFDATRELLE 359
AAV GH E+ FD F NF T ELLE
Sbjct: 916 AAVPKGHEESSFDSSFLENF--TPELLE 941
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 350 FSCSVKIDFKPVVKF--GLGVATDYCCHVE-KHISVSVYQLIA 231
F+CS +DFK + +F GL + +CC E I + V +IA
Sbjct: 13 FNCSEGLDFKMMGRFFSGLAQSGAWCCFDEFNRIDIEVLSVIA 55
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 350 FSCSVKIDFKPVVKF--GLGVATDYCCHVE-KHISVSVYQLIA 231
F+CS +DFK + +F GL + +CC E I + V +IA
Sbjct: 81 FNCSEGLDFKMMGRFFSGLAQSGAWCCFDEFNRIDIEVLSVIA 123
>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
Length = 416
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 123 SPLHVTELVLSGSRLPASRDDPRVRLL-AVDLSKPGAGDQLIDANTDVFFHMA 278
SPL TE + S L + D +L A+ L+KP +G L+D + F+ A
Sbjct: 361 SPLGETEFLKRISMLQTTSADSGKKLFEALTLNKPNSGKSLVDPDVFACFYEA 413
>SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23)
Length = 313
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 302 LGVATDYCCHVEKHISVSVYQLIACSGFGQIDCEKPDSR 186
LG T+Y K ++ Y + + FG +D KPDS+
Sbjct: 43 LGALTEYLSAQLKEFNIESYAALGIASFGPVDL-KPDSK 80
>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
Length = 624
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 DSPLHVTELVLSGSRLPASRDDPRVRL-LAVDLSKPGAGDQLID 248
D PLH EL + +R PA++ L +A D++ P Q+ D
Sbjct: 557 DRPLHTRELAAAFTRTPAAKQRANNPLVVADDVTPPAKAQQIKD 600
>SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 939
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 192 LEDRLAKLVGVNQIALARLHATGNLIPKE 106
LEDR+ LVG++++ L R+ IPKE
Sbjct: 335 LEDRVNYLVGISRLRLERVKNGSCTIPKE 363
>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
Length = 721
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 377 GSLSCCLQEFSCSVKIDF 324
G LSCCL +F C + F
Sbjct: 488 GDLSCCLSDFGCQIDRHF 505
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = -2
Query: 237 DRLLRVWTDRLREAGLEDRL--AKLVGVNQIALARL----HATGNLIPKENQPHASLKTH 76
D L+ + D ++A LED L VG++ + L HA + PKE +
Sbjct: 216 DPLMLLDVDATQKAMLEDHLNLVNRVGLHTCSDYCLRTPRHAEPGMQPKERICRIEFDSE 275
Query: 75 RHRSLQLSYL 46
HR++Q SYL
Sbjct: 276 YHRAIQFSYL 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,958,199
Number of Sequences: 59808
Number of extensions: 288635
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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