Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C02
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 39 0.002
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 30 0.83
AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched relat... 30 1.1
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 28 4.4
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 28 4.4
L13200-2|ABE73330.1| 810|Caenorhabditis elegans Hypothetical pr... 27 5.8
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 5.8
AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical... 27 5.8
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 27 7.7
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 27 7.7
AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical ... 27 7.7
AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical ... 27 7.7
AC090999-22|AAK26159.1| 481|Caenorhabditis elegans Hypothetical... 27 7.7
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 39.1 bits (87), Expect = 0.002
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Frame = +3
Query: 57 VVVTGAGGFLGSRVADFL---LGSDSPLHVTELVLSGSR---LPASRDDPRVRLLAVDLS 218
VV+TG GF+GS +++ + + +++ +L+L+ + R+ PR +L+ D+
Sbjct: 8 VVITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKLVLTDIK 67
Query: 219 KPGAGDQLIDAN-TDVFFHMAA-VVSGHAEAEFDYGFKVNFDATRELLETARKRAPNLKF 392
A + + N D H AA S E + N + + LET R +F
Sbjct: 68 NEAAILNVFEQNEIDTVIHFAADCTSTRCYNETAEAVQNNVLSFIQFLETVRTYGKIKRF 127
Query: 393 VYTSAVAVFG-GDLPSVVDDTI---AVMPQNSYGTAKAISE 503
V+ S V+G DL + ++P N Y K E
Sbjct: 128 VHISTDEVYGDSDLSENEQGKVEFSRLVPGNPYAATKIAGE 168
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 30.3 bits (65), Expect = 0.83
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 13/162 (8%)
Frame = +3
Query: 57 VVVTGAGGFLGSRVADFLLG---SDSPLHVTELVLSGSRLPAS---RDDPRVRLLAVDL- 215
V++TG GF+GS +F + ++ +L S L R+ PR + + L
Sbjct: 11 VLITGGCGFIGSNYINFTFNKWKNTKFINYDKLAFGASPLHVEKEIRESPRYKFVEAALE 70
Query: 216 SKPGAGDQLIDANTDVFFHMAAVVSGHAEAEFDYG-FKVNFDATRELLETARKRAPN--L 386
+P L + D+ H AA+ G + N +T LLE+
Sbjct: 71 DQPTLIKTLQENEVDMVIHFAAITHVDESYSDRIGTIQDNIISTTTLLESIVNSPYKGVK 130
Query: 387 KFVYTSAVAVFGGDLPSVVDDTIAVM---PQNSYGTAKAISE 503
K V+ S V+G + + P N Y +KA E
Sbjct: 131 KLVHISTDEVYGDSFEDTTPKSESASLPNPTNPYAASKAACE 172
>AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched related
family protein 21 protein.
Length = 909
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -3
Query: 374 SLSCCLQEFSCSVKIDFKPV----VKFGLGVATDYCCHVEKHISVSVYQLIACSGFGQID 207
S+S + + C +D PV V +G++ D+ HV H V + +I+
Sbjct: 733 SISIGVTGYLCFWDLDLDPVTLCAVIVSIGMSVDFVAHVACHYQVRYKEFEEKGVLKRIE 792
Query: 206 CEKPDSRIVS 177
+ P+SR+V+
Sbjct: 793 MKTPESRVVN 802
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 27.9 bits (59), Expect = 4.4
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Frame = +3
Query: 60 VVTGAGGFLGSRVADFL--LGSDSPLHVTELVLSGSRLPASRDDPRVRLLAVDLSKPGAG 233
V+ G GGFLG+ V L +G + V + + D + +
Sbjct: 5 VIVGGGGFLGAHVISALQKIGCKERIIVVDPCPQEFK-TIKIDKSNISYIKASFLDDKVL 63
Query: 234 DQLIDANTDVFFHMAAV-VSGHAEAEFDYGFKVNFDATRELLETARKRAPNLKFVYTSAV 410
+ +++ + V H+AAV +G + N + T++L++ + +F+Y S+V
Sbjct: 64 ENILNGASAV-VHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIKQCKALGVK-RFLYASSV 121
Query: 411 AV--FGGDLPSVVDDTIAVMPQ---NSYGTAKAISE 503
AV G L +V +D P+ + Y +KA +E
Sbjct: 122 AVSFIGEPLDNVTEDDPLPDPKKYLDFYSASKAEAE 157
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KVVVTGAGGFLGSRVADFLL 113
KV+VTGA GF+G+ + LL
Sbjct: 7 KVLVTGASGFIGTHCVEILL 26
>L13200-2|ABE73330.1| 810|Caenorhabditis elegans Hypothetical
protein ZK1236.3b protein.
Length = 810
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 151 STSSVTCNGESDPKRKSATREPKNP 77
STSS +C+ E++ K REP P
Sbjct: 206 STSSPSCSSEANRKEMETVREPAGP 230
>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
protein ZK1236.3a protein.
Length = 1000
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 151 STSSVTCNGESDPKRKSATREPKNP 77
STSS +C+ E++ K REP P
Sbjct: 396 STSSPSCSSEANRKEMETVREPAGP 420
>AC025716-10|AAK39607.1| 474|Caenorhabditis elegans Hypothetical
protein Y39G10AR.7 protein.
Length = 474
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 88 PKNPPAPVTTTFIFASRFEKKN 23
P+ PP P+T T I ASR ++ N
Sbjct: 297 PRCPPPPLTVTMIGASRSQRAN 318
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 30 FSNRLANMKVVVTGAGGFLGSRVADFLL 113
+ N ++++TG GF+GS + D L+
Sbjct: 130 YRNEETRKRILITGGAGFVGSHLVDKLM 157
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 30 FSNRLANMKVVVTGAGGFLGSRVADFLL 113
+ N ++++TG GF+GS + D L+
Sbjct: 130 YRNEETRKRILITGGAGFVGSHLVDKLM 157
>AF067937-7|AAN84819.1| 392|Caenorhabditis elegans Hypothetical
protein F22F7.1b protein.
Length = 392
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 42 LANMKVVVTGAGGFLGSRVADFLLGSD 122
++ VVV GA GF G+ V ++L+ S+
Sbjct: 1 MSRYDVVVYGASGFTGAYVVEYLVNSE 27
>AF067937-6|AAF99915.1| 426|Caenorhabditis elegans Hypothetical
protein F22F7.1a protein.
Length = 426
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 42 LANMKVVVTGAGGFLGSRVADFLLGSD 122
++ VVV GA GF G+ V ++L+ S+
Sbjct: 1 MSRYDVVVYGASGFTGAYVVEYLVNSE 27
>AC090999-22|AAK26159.1| 481|Caenorhabditis elegans Hypothetical
protein Y82E9BR.17a protein.
Length = 481
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 309 FDYGFKVNFDATRELLETARKRAPNLKF 392
FD+ F +RELL+T KR NL++
Sbjct: 165 FDFHFDFTSQPSRELLKTGVKRRKNLRW 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,276
Number of Sequences: 27780
Number of extensions: 219447
Number of successful extensions: 686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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