Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C02
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 127 GESDPKRKSATREPKN 80
           G S PK+++   +PKN
Sbjct: 21  GASSPKKRNKNPQPKN 36


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 337  TLHENSWRQQESEP 378
            TL   +WRQQ+  P
Sbjct: 1344 TLERTAWRQQQPPP 1357


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 371 LSCCLQEFSCSVKIDFKPV 315
           L+ CLQE S    ++F P+
Sbjct: 21  LTQCLQESSTGQSVEFSPM 39


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 77  WVFRLACG*FSFGIRF 124
           WVF LAC   + GI F
Sbjct: 487 WVFTLACTAGTLGIIF 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,048
Number of Sequences: 438
Number of extensions: 2576
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)