Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C01
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   1.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   3.1  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   3.1  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   4.2  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    24   5.5  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    24   5.5  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    24   5.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    23   7.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   7.3  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    23   7.3  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    23   7.3  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    23   9.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   9.6  

>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 112 RSHLSVFYFLLQSRSVNKL 56
           +SHL+ +YF L++RS+N +
Sbjct: 261 QSHLNSYYFSLRTRSLNNV 279


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 219 FCFLLIKXINASESGWGKSLATTARI-HASATYRAH 115
           FC++  K + +  + W K LAT+ +   A++ Y A+
Sbjct: 677 FCYIASKSLQSYANLWLKQLATSTKTSKAASAYGAY 712


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 157 HNSENTRERDVQSTRRSHLSVFYFLLQSRSVNK 59
           HNS  T+E   ++    H S F  LL+S +V K
Sbjct: 305 HNSLQTKEFVAKNLTGGHASCFSVLLKSDTVAK 337


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 220  VLFLINQIXKRI*ERMGQVTGHNSENTRERDVQSTRRS 107
            +LFL N+  KR  E   +V         E+DV ST  S
Sbjct: 1184 LLFLENKKLKRTVESSNRVIADLQRGITEKDVSSTSES 1221


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122 LYVALACILAVVASDLPHPLSDAFXNLI-NKKQNTWK 229
           LY+ +  I+A+ +++LP     AF  +  N  Q  W+
Sbjct: 123 LYIKMGQIIAMQSNNLPEAYGKAFQGMFDNAPQVEWE 159


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 CTSRSRVFSLLWPVTCPIRSQMRL 194
           C   S++FSL WP    +  +++L
Sbjct: 387 CIRHSKLFSLPWPCRHKVNRELKL 410


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 66  TDRLCKRK*NTE-RWLLRVLCTSRSRV 143
           +D  C R+ N    W L VLCTS   V
Sbjct: 188 SDFFCSRETNMPPTWYLYVLCTSEGEV 214


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 192 NASESGWGKSLATTARIHASATY 124
           +A+  GWG+ L T   IH    Y
Sbjct: 421 SAAIDGWGQDLRTIMAIHTHRKY 443


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 ASDLPHPLSDAFXNLINKK 214
           A+D   PLS  F NLI K+
Sbjct: 335 ANDSKRPLSKLFSNLITKR 353


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 177 RSQMRLXI*LIRNKTHGKLAGTSRRIHRLHTSQYXWEP 290
           RSQ R+   +  N    K  G S+ +  L  S Y +EP
Sbjct: 314 RSQKRIDQAMKDNMKSNKKKGDSKGVSILERSHYQFEP 351


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 294 FKAPXNIVMCANGVCVGKFRPAFHVFCFLLIKXINASESGWG 169
           F     I +C  GV  G     FH + +L I  +     G+G
Sbjct: 410 FNNTMTIALCVFGVFAGAMHRVFHRYKYLQIIGLVIKIVGYG 451


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 163 TGHNSENTRER--DVQSTRRSHLSVFYFLLQSRSVNKLTRNSNECSAITE 20
           TG+  E+ +E   +VQ T +    V     ++ S+N  + +S ECS  T+
Sbjct: 93  TGNPQESKQEPNLEVQQTEKEK-DVDSASAENESINSSSSSSKECSTQTQ 141


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 186  SESGWGKSLATTARIHASATYRAH 115
            S+ GW   LA   R H    +R H
Sbjct: 978  SDRGWDSLLACLVRDHVVKVFRRH 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,831
Number of Sequences: 5004
Number of extensions: 20020
Number of successful extensions: 64
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)