Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_C01
         (298 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1022 - 8815675-8816809,8819696-8819907                           30   0.28 
06_03_0183 + 17642639-17643428,17644507-17644949                       27   2.6  
10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049           27   3.5  
09_03_0008 - 11451631-11451688,11451837-11452377,11452620-11452692     26   4.6  
03_06_0398 + 33629421-33629633,33629960-33630063,33630140-336301...    26   4.6  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    26   4.6  
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213...    26   6.0  
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467...    26   6.0  
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173     25   8.0  
07_01_0326 + 2285964-2286431                                           25   8.0  
03_05_0198 + 21890523-21891002                                         25   8.0  
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193...    25   8.0  
02_05_0626 - 30456714-30456829,30456951-30457023,30457136-304572...    25   8.0  
02_02_0160 + 7309520-7310092                                           25   8.0  

>07_01_1022 - 8815675-8816809,8819696-8819907
          Length = 448

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 131 ALACILAVVASDLPHPLSDAFXNLINKKQNTWKAGRNFPTH 253
           +L C+L   A+DLPH L          K N W+    FP+H
Sbjct: 163 SLICLLTAAAADLPHRLVYRGTGAYPDKYNYWRYA--FPSH 201


>06_03_0183 + 17642639-17643428,17644507-17644949
          Length = 410

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 202 QIXKRI*ERMGQVTGHNSENTRERDVQSTRRSHLSVFY 89
           Q  K + ER+GQ+ G     T  R  +  RR++++V Y
Sbjct: 254 QCFKALRERLGQLQGRVRHPTLRRAARPPRRAYINVQY 291


>10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049
          Length = 751

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 10  VSAAQLLRYIRLSYASIY*PIDSVKENKILKDGSF 114
           +++  + +Y R+SY  +Y   DS+    ++  GSF
Sbjct: 412 ITSLLIKKYPRISYVELYAATDSLSSENLIGRGSF 446


>09_03_0008 - 11451631-11451688,11451837-11452377,11452620-11452692
          Length = 223

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 99  ERWLLRVLCTSRSRVFSLLWP 161
           +++++RV+ +  S++ SLLWP
Sbjct: 96  DKYIVRVMISRNSQMISLLWP 116


>03_06_0398 +
           33629421-33629633,33629960-33630063,33630140-33630194,
           33630293-33630341,33630427-33630599,33630731-33630808,
           33630923-33630985,33631400-33631525,33631667-33631795
          Length = 329

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 200 NX*THLRADGASHWPQQREYTRARRTEHTKE 108
           N  THLR D A     +RE  R RR +  +E
Sbjct: 184 NAGTHLRRDKALSQMDERELKRERRKQSNRE 214


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 222 VFC-FLLIKXINASESGWGKSLATTARIHASATYRAHEGAIFQYFIFFYRVDR 67
           + C FLL+  +  +ES    SL    +  A A +  +  ++ +YF+ + R++R
Sbjct: 148 ILCSFLLVDSLATAESYQSCSLKVNHKRVAKAYFIGYNRSLCKYFVCYERLNR 200


>09_03_0177 -
           13120816-13120941,13121032-13121137,13121231-13121305,
           13121385-13121461,13122462-13122549,13122638-13122699,
           13122807-13122863,13122960-13123049,13123186-13123251,
           13123530-13123619,13123711-13123804,13123915-13124213
          Length = 409

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 131 ALACILAVVASDLPHPLSDA 190
           ALA +LAV ++  P PLSDA
Sbjct: 32  ALASLLAVSSAQAPAPLSDA 51


>01_06_0246 +
           27845898-27846001,27846235-27846237,27846472-27846700,
           27846814-27846968,27847091-27847136,27847233-27847324,
           27847425-27847521,27847649-27847705,27847799-27847927
          Length = 303

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 286 SHXYCDVCKRCMRRE--VPASFPCVLFL 209
           SH YC +C+R   RE    A   C+L+L
Sbjct: 72  SHGYCIMCERLSIRERRTTAGLGCLLYL 99


>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
          Length = 377

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 116 CALYVALACILAVVASDLPHPLSDAFXNLINKK 214
           C+LY+A+    A +A+ LP    +   N  N K
Sbjct: 80  CSLYIAIGSRWATIAAQLPGRTDNDIKNYWNSK 112


>07_01_0326 + 2285964-2286431
          Length = 155

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 139 VYSRCCGQ*LAPSAL 183
           ++ RCCGQ L+P A+
Sbjct: 64  IFGRCCGQQLSPRAI 78


>03_05_0198 + 21890523-21891002
          Length = 159

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 195 INASESGWGKSLATTARIHASATYRAHEG 109
           I AS S W +  A  A  H SA   A +G
Sbjct: 90  IRASSSSWREGAAAAAEGHGSAPVLARQG 118


>03_05_0013 -
           19718178-19718930,19718997-19719205,19719245-19719325,
           19719581-19720613
          Length = 691

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 226 ESWPELPDAYTVCTHHNIXGSL 291
           E+W  L +   VC HH + G L
Sbjct: 191 EAWERLQEYVAVCPHHGMDGWL 212


>02_05_0626 -
           30456714-30456829,30456951-30457023,30457136-30457250,
           30457368-30457450,30457532-30457685,30457859-30458095,
           30458212-30458435,30458657-30458774,30459286-30459614
          Length = 482

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 292 QGSHXYCDVCKRC 254
           QG+  YC+ CK+C
Sbjct: 174 QGNQNYCETCKQC 186


>02_02_0160 + 7309520-7310092
          Length = 190

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 182 SDAFXNLINKKQNTWKAGRNFPTHTPFAHITIXMGALK 295
           +DA  +++ K       G   PT+T   H+T   GA+K
Sbjct: 145 ADAMRHILRKLSAAAAPGSPKPTNTSRRHLTTAEGAIK 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,519,592
Number of Sequences: 37544
Number of extensions: 131360
Number of successful extensions: 409
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)