Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_C01
(298 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 30 0.38
SB_46279| Best HMM Match : PBS_linker_poly (HMM E-Value=5.4) 28 1.6
SB_43240| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_57345| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00057) 26 4.7
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 26 4.7
SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28) 26 4.7
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_42265| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12) 25 8.3
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_35878| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 119 ALYVALACILAVVASDLP--HPLSDAFXNLINKKQNTWKAGRNF 244
A +VALA ++ +PLS + IN TWKAG+NF
Sbjct: 8 ATFVALASAGPILTKSPVDNNPLSMEAIDFINSLHTTWKAGKNF 51
>SB_46279| Best HMM Match : PBS_linker_poly (HMM E-Value=5.4)
Length = 360
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 145 NTRERDVQSTRRSHLSVFYFLLQSRSVNKLTRNSNE 38
+TRERD Q+ ++ + F +LQS S K T S++
Sbjct: 316 HTRERDQQTQPKTQIDTFALILQS-SARKQTSTSHQ 350
>SB_43240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 145 NTRERDVQSTRRSHLSVFYFLLQSRSV 65
NTRERD Q+ ++ + F +LQ +++
Sbjct: 43 NTRERDQQTQLKTQIDTFILILQLKTL 69
>SB_57345| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00057)
Length = 214
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 193 KRI*ERMGQVTGHNSENTRERDVQSTRRSHLSVFYFLLQSRSVNKLTR 50
K + +R+G+V T E D Q+ ++ LSV Y R V TR
Sbjct: 46 KELRDRIGRVENATVNKTPESDEQTYAKASLSVVYGSRHVRLVASKTR 93
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 94 ILKDGSFVCSVRRARVYSRCC-GQ*L--APSALRCV 192
ILKD F+ S ++ V S CC G+ PS +RC+
Sbjct: 106 ILKDAEFLQSNKKLTVGSNCCIGKDAGETPSRVRCI 141
>SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)
Length = 588
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 93 NTERWLLRVLCTSRSRVFSLLWPVTCPIRSQ 185
N + W LCT ++ ++L W T PI Q
Sbjct: 464 NLKTWDNNFLCTPKNSPYNLEWSRTGPIEGQ 494
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 154 NSENTRERDVQSTRRSHLSVFYFLLQSRSVNKLTRNSNE 38
NSE R RD+ + + S LS L++R +++ RN E
Sbjct: 740 NSEAKRHRDILAQKESELSFVSEQLRTRE-SEIKRNQEE 777
>SB_42265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 145 NTRERDVQSTRRSHLSVFYFLLQS 74
+TRERD Q+ ++ + F +LQS
Sbjct: 43 HTRERDQQTQLKTQIDTFILILQS 66
>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
Length = 469
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 173 GASHWPQQREYTRARRTEHTKEP 105
G +H P E R R+ EH ++P
Sbjct: 268 GHAHTPHSHEGKRGRKREHDRDP 290
>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 179 ADGASHWPQQREYTRARRTEHTKEPSFSILFSFTES 72
AD ++W + R YT R T ++I F+ T S
Sbjct: 141 ADHITYWNKVRHYTEQRTLSLTGTSQWTIAFNGTRS 176
>SB_35878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 145 NTRERDVQSTRRSHLSVFYFLLQS 74
+TRERD Q+ ++ + F +LQS
Sbjct: 43 HTRERDQQTQLKTQIDTFILILQS 66
>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 103 LSVFYFLLQSRSVNKLTRNSNECSAITE 20
L +Y +R K+TR SNE +TE
Sbjct: 60 LLTYYLAALARKTPKVTRRSNEAVIVTE 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,249
Number of Sequences: 59808
Number of extensions: 164339
Number of successful extensions: 564
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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