Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B24
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    29   0.61 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   3.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.3  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   10.0 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   10.0 

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 663 CIVVINDNTLI--GFQVGFPQPSLCCRKDPGVRCSSSGSTVWRN 538
           CI    DN L+  GF  G    SL  R +P V   SSG  VW N
Sbjct: 275 CIAQNKDNGLVTVGFDNGLITFSLG-RDEPSVTMDSSGKVVWSN 317


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 637 PYWIPGWFSTTFTLLSQGPGCSM 569
           P+W  G +STTF +++  PG S+
Sbjct: 661 PFWNIGIWSTTFNVITFRPGLSL 683


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 296 LPHTYPLSRPIFKSLCVLSLSQI 228
           +P  +P S+PI+K LC++ L  I
Sbjct: 582 VPRRFPGSKPIWKRLCIIVLIAI 604


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 79 NIPSIFILCYCLWHK 35
          ++PSI+ILC+C  H+
Sbjct: 34 SLPSIYILCHCSKHQ 48


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 303 LASVPSYCPVXVAQTGTLTLINVPGV 380
           ++SVP Y  +      TLTL+++PG+
Sbjct: 132 ISSVPIYLRIYSPHVLTLTLVDLPGL 157


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 535 NRHGLPSVSDAVATANLFDLP---RADTWLY 452
           N +GL  + D+V   +LFD P   R  +WL+
Sbjct: 21  NDYGLHGLDDSVGFTDLFDAPNIYRVYSWLH 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,107
Number of Sequences: 5004
Number of extensions: 51083
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)