Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B24
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187...    31   1.1  
09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379           28   7.8  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   7.8  

>10_08_0928 +
           21617977-21618157,21618260-21618378,21618653-21618774,
           21618853-21619049,21619350-21619603,21619779-21619880,
           21619976-21620404,21620611-21621369,21621586-21621771
          Length = 782

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 240 GQDAQRFENRS*KRVRVRKPILASVPSYCPVXVAQTGTLTLINVPG 377
           G  +Q    R  K  R    I  SVPS+C V V   G L+ +  PG
Sbjct: 132 GDSSQGNFIRKSKGTRTSSQICRSVPSFCAVYVVSKGGLSAVYSPG 177


>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
          Length = 377

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 524 SVPVELRHTVEPELEHRTPGSLRQQSEGCGKPTWN--PIRVLSLITTMHRLV 673
           ++P+E+ H    +   + P + RQ+ + C  P  N   I +LS++  M  LV
Sbjct: 163 ALPLEVAHDFAKQDNLKPPNNQRQEQDRCQLPNHNILAIVILSVLVAMSVLV 214


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 477 SRVQIHGCISATLTSWHS 424
           +RV+ H CIS+++  WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,049,870
Number of Sequences: 37544
Number of extensions: 374249
Number of successful extensions: 930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)