Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B24
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    46   2e-05
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    46   2e-05
U23451-2|AAC46746.1|  107|Caenorhabditis elegans Insulin related...    32   0.32 
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF016415-4|AAW88419.1|  298|Caenorhabditis elegans Serpentine re...    30   1.3  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
 Frame = +2

Query: 269 VVKEGTCEEAD-PCVCTFILPGRCGTDGNTYPNKCSRSLRXXXAPSL-EMKHRGEC---- 430
           VVK     E + P  C  ++   C T+G T+ N+C    +     S+ ++KH+G C    
Sbjct: 382 VVKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGV 441

Query: 431 ----------QEVKVADIQP-CIC---TREIKQVCGSDGVTY 514
                     Q   V D +P C+C   T E K+VCGSDG TY
Sbjct: 442 CATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTY 483



 Score = 30.7 bits (66), Expect = 0.99
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 24/92 (26%)
 Frame = +2

Query: 311 CTFILPGRCGTDGNTYPNKCS-RSLRXXXAPSLEMKHRGECQ------------------ 433
           CT      CG+DG TY N+C  ++       ++ +K+   C+                  
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVG 527

Query: 434 -----EVKVADIQPCICTREIKQVCGSDGVTY 514
                E K  D  P     E K+VCG+DGVTY
Sbjct: 528 ENEKAECKCPDDCPSYEMEEGKEVCGTDGVTY 559



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 CTFILPGRCGTDGNTYPNKCSRSLRX-XXAPSLEMKHRGECQE 436
           CT      CGTDG TY N+C   L        + +  RG C E
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDE 365


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)
 Frame = +2

Query: 269 VVKEGTCEEAD-PCVCTFILPGRCGTDGNTYPNKCSRSLRXXXAPSL-EMKHRGEC---- 430
           VVK     E + P  C  ++   C T+G T+ N+C    +     S+ ++KH+G C    
Sbjct: 390 VVKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTCGIGV 449

Query: 431 ----------QEVKVADIQP-CIC---TREIKQVCGSDGVTY 514
                     Q   V D +P C+C   T E K+VCGSDG TY
Sbjct: 450 CATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTY 491



 Score = 30.7 bits (66), Expect = 0.99
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 24/92 (26%)
 Frame = +2

Query: 311 CTFILPGRCGTDGNTYPNKCS-RSLRXXXAPSLEMKHRGECQ------------------ 433
           CT      CG+DG TY N+C  ++       ++ +K+   C+                  
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKCDFYSACVVG 535

Query: 434 -----EVKVADIQPCICTREIKQVCGSDGVTY 514
                E K  D  P     E K+VCG+DGVTY
Sbjct: 536 ENEKAECKCPDDCPSYEMEEGKEVCGTDGVTY 567



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 311 CTFILPGRCGTDGNTYPNKCSRSLRX-XXAPSLEMKHRGECQE 436
           CT      CGTDG TY N+C   L        + +  RG C E
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDE 373


>U23451-2|AAC46746.1|  107|Caenorhabditis elegans Insulin related
           protein 3 protein.
          Length = 107

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -3

Query: 629 DSRLVFHNLHSVVARTRVFDAQARVRLCG 543
           DS + FHN+HS++AR+R  D   +V++CG
Sbjct: 38  DSEIGFHNIHSLMARSRRGD---KVKICG 63


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 398 PSLEMKHRGECQEVKVADIQPCICTREIKQV-CGSD 502
           P  E+ H G C E K+   + C C +  K V CGSD
Sbjct: 333 PCTELCHPGPCIECKLFTTKSCNCGKTKKSVRCGSD 368



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +2

Query: 332 RCGTDGNTY-PNKCSRSLRXXXAPSLEMKHRGECQEVKVADIQPCICTREIKQV 490
           RCG+D        C + L         + H G+C E  V   Q C C +  K+V
Sbjct: 364 RCGSDQEVMCETVCGKQLSCGQHNCERICHSGDCGECTVILEQDCFCGKTPKEV 417


>AF016415-4|AAW88419.1|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 31 protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 640 YPYWIPGWFSTTFTLLSQGPGCSMLKLGFDCVAQFNRHGLPSVSDAVA 497
           +P +  G     FT++ +  GC++  +   C+ +F +HG P     +A
Sbjct: 243 WPQYFSGENLGPFTVVMKVTGCAIESIVVSCLLKFGKHGKPKSHSLIA 290


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 335 CGTDGNTYPNKCS--RSLRXXXAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 508
           CGT+G T+ N CS  + +      ++E+ + G C +          C  +   VC S G 
Sbjct: 780 CGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTN--------CPSDFSPVCDSKGS 831

Query: 509 TY 514
           T+
Sbjct: 832 TH 833



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +2

Query: 269 VVKEGTCEEADPCV--CTFILPGRCGTDGNTYPNKCSRSLRXXXAPSLEMKHRGECQE 436
           +  E  C   + C   CT      C +D +TY N C    +      LE+  +G+C E
Sbjct: 574 IATEENCISKEACQMPCTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE 631



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +2

Query: 305 CVCTFILPGRCGTDGNTYPNKCSRSLRXXXAPSLEMKHRGECQEVK 442
           C C  ++   CGTD  TY N C           L   + G C + K
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKK 64



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 461 CICTREIKQVCGSDGVTY 514
           C C   I+ VCG+D VTY
Sbjct: 19  CDCPSVIRPVCGTDNVTY 36


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 447 PIYSHVSARGRSNRFAVATASLTDGNPCLLNCA 545
           PI+  +  RG+ +   ++ + +  GNPCL N A
Sbjct: 230 PIHPTIIHRGQQSSQQMSASPVASGNPCLPNAA 262


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 447 PIYSHVSARGRSNRFAVATASLTDGNPCLLNCA 545
           PI+  +  RG+ +   ++ + +  GNPCL N A
Sbjct: 230 PIHPTIIHRGQQSSQQMSASPVASGNPCLPNAA 262


>Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical
           protein C50B6.4 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 459 HVSARGRSNRFAVATASLTDGNPCLLNCATQSNPSLSIEHPGP 587
           H    G+     VA   +++G PC+   A +  P+     PGP
Sbjct: 107 HAGEAGKPGTAGVAVGIVSEGGPCIKCPAGEPGPAGEAGAPGP 149


>AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical
           protein Y2H9A.3 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 459 HVSARGRSNRFAVATASLTDGNPCLLNCATQSNPSLSIEHPGP 587
           H    G+     VA   +++G PC+   A +  P+     PGP
Sbjct: 107 HAGEAGKPGTAGVAVGIVSEGGPCIKCPAGEPGPAGEAGAPGP 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,756
Number of Sequences: 27780
Number of extensions: 313076
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)