Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B24
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26920.1 68418.m03210 calmodulin-binding protein similar to c...    31   0.70 
At1g48540.2 68414.m05428 leucine-rich repeat family protein            28   5.0  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            28   5.0  
At5g06750.1 68418.m00763 protein phosphatase 2C family protein /...    28   6.6  
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR...    27   8.7  

>At5g26920.1 68418.m03210 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 492

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 660 IVVINDNTLIGFQVGFPQPSLCCRKDPGVRCSSSGS 553
           I  +ND T     VG PQ SL C +DPG   + SGS
Sbjct: 292 ITAVNDRTF----VGHPQRSLQCPQDPGFVVTCSGS 323


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +2

Query: 533 VELRHTVEPELEHRTPGSLR-----QQSEGCGKPTWNPIRVLS 646
           +ELRHT+E  + H +  +LR     + +E    P WN + V+S
Sbjct: 132 IELRHTLEKIICHNSTDALRHVFASRIAEITNSPEWNKLAVIS 174


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +2

Query: 533 VELRHTVEPELEHRTPGSLR-----QQSEGCGKPTWNPIRVLS 646
           +ELRHT+E  + H +  +LR     + +E    P WN + V+S
Sbjct: 132 IELRHTLEKIICHNSTDALRHVFASRIAEITNSPEWNKLAVIS 174


>At5g06750.1 68418.m00763 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain;
          Length = 393

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 294 KPILASVPSYCPVXVAQTGTLTLINV 371
           KP++A+V S C V V   GTL + NV
Sbjct: 143 KPLIAAVGSCCLVGVIWKGTLLIANV 168


>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1253

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 522  CRQ*VT-PSLPQTCLISRVQIHGCISATLTSW 430
            CR  +  P+LPQ+  +  + +HGC+S    SW
Sbjct: 976  CRNLILLPALPQS--LKLLNVHGCVSLESVSW 1005


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,164,210
Number of Sequences: 28952
Number of extensions: 284859
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)