Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B23
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.4  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   4.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   9.5  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +1

Query: 127  FVLDTSGS---MSGRKMEQLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTR 297
            F+L+TSG+    + + +  +K  +Y       P     I+D      ++ LS  DK+   
Sbjct: 1446 FILETSGTSQLFAHQILWNMKANLYKDEAATVPDSIKPILDRVMDKMINSLSGEDKQFYE 1505

Query: 298  YKYFYYNEIQPKLDLVAPYQATPENIEKAKI 390
             ++ ++NE+      + P+    +  +KAKI
Sbjct: 1506 REFTFFNEVTSISGKLKPFIRKSKPEKKAKI 1536


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 25/100 (25%), Positives = 47/100 (47%)
 Frame = +1

Query: 172 QLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAP 351
           QL  +++ I N LN  D +  +D  S    H +   DKEK+++   YY     K++++  
Sbjct: 49  QLLRSIHIIQNLLNELDNY--VD-RSDCLFHSVWRTDKEKSKFSGNYYPFSPSKMNVITI 105

Query: 352 YQATPENIEKAKIIISRLESIGGTDINTALTVAVDLINKY 471
             +   +    + +IS+L   G     + L V ++  NK+
Sbjct: 106 DLSLRSSSTADEKLISQL---GEEAHESLLKVHIEKANKH 142


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 639 DSWIAVCQEYDNRFQGFD 586
           + WI V Q+YD+ F+  D
Sbjct: 609 EGWIKVKQDYDDEFESLD 626


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 112 NKYVVFVLDTSGSMSGRKMEQLKEAMYTILNELNPGDYFS 231
           N Y + V+D       +  E LKE   +  N    GDY S
Sbjct: 307 NNYGLVVIDGDNVTISKNYETLKEKYASAANYTGDGDYSS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,477
Number of Sequences: 5004
Number of extensions: 54256
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)