Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B22
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           29   1.8  
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    28   4.1  
11_06_0126 - 20378611-20379719,20380081-20381239                       28   5.4  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   5.4  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    28   5.4  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 515 AFKKCCLFI*LLAYKSKRGFYILNMLSELINM-TSLYDQFINMSESKYVRSSF 360
           A   CCL +  +  K   G+ I + L + I + TSL D +    E  Y RS F
Sbjct: 215 ALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVF 267


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 173 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 78
           +A +VD  ++G   P + G+  T +  G PP+
Sbjct: 71  VAGVVDFPVEGSANPFMVGLYFTRVKLGSPPK 102


>11_06_0126 - 20378611-20379719,20380081-20381239
          Length = 755

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -1

Query: 239 ISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNR 60
           + LS+ N  G +   TL   +YL+ + D+S +  +  + +G  +  ++  + P +  GN 
Sbjct: 644 LELSRNNLSGEIPS-TLSNLSYLSNL-DLSYNNLSGTIPSGSQLGTLYM-EHPDMYNGNN 700

Query: 59  SLCGKPRR 36
            LCG P R
Sbjct: 701 GLCGPPLR 708


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 158 DISIDGKTIPVLTGVTMTNIW 96
           D S D   +PV+ GVT+ N+W
Sbjct: 360 DASYDPSKLPVVDGVTIKNVW 380


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 299 FLYTCTSVNFMLFVKKVGI*ISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTI 132
           ++   T  NF  FVK  GI      G+PR +    T ++   LA   +IS+  K +
Sbjct: 249 YVRLATHANFRTFVKSAGIDFYPLGGDPRILAQYMTKNKGFCLAGPTEISVQRKQL 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,418
Number of Sequences: 37544
Number of extensions: 262293
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)