Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B22
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_25545| Best HMM Match : ABC_tran (HMM E-Value=0.00042)              30   1.4  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    30   1.4  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     27   7.2  

>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 300 LSVYLHVGKLHVVCEESRHINFPIEGES*GHCVETYTPPTSVSRLHSRHI 151
           ++ YL++ ++  + ++ RHI   + G++ G  V  +    SV R H + I
Sbjct: 105 VAAYLNIPEIIRIAKKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVI 154


>SB_25545| Best HMM Match : ABC_tran (HMM E-Value=0.00042)
          Length = 146

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = -1

Query: 452 ILNMLSELINMTSLYDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVN 273
           ++N+L  ++N  S    F+  S S  V S  FI ++ +S  +  L  V  S  +  +S++
Sbjct: 23  VVNLLPFVVNSLS----FVVSSLSFVVNSLSFI-VNSLSFVVSSLSFVVNSLSFVVSSLS 77

Query: 272 FMLFVKKVGI 243
           F  F+K VG+
Sbjct: 78  FWSFLKDVGL 87


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = -1

Query: 452 ILNMLSELINMTSLYDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVN 273
           ++N+L  ++N  S    F+  S S  V S  FI ++ +S  +  L  V  S  +  +S++
Sbjct: 368 VVNLLPFVVNSLS----FVVSSLSFVVNSLSFI-VNSLSFVVSSLSFVVNSLSFVVSSLS 422

Query: 272 FMLFVKKVGI 243
           F  F+K VG+
Sbjct: 423 FWSFLKDVGL 432


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 449 LNMLSELINMTSLYDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNF 270
           LN+LS ++N  S      N+S+ +Y+R S     S+   +     +++ S     T VNF
Sbjct: 368 LNLLSLMLN--SGIGSLGNVSDLRYIRDSLLPQESEAEATAAFTRLIESSLSSWFTQVNF 425

Query: 269 ML 264
            +
Sbjct: 426 FI 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,461
Number of Sequences: 59808
Number of extensions: 315601
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)