Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B22
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    29   1.6  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    28   4.8  

>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -1

Query: 524 PSFAFKKCCLFI*LLAYKSKRGFYI-LNMLSELINMTSLYDQFINMSESKYVRSSFFITI 348
           P F F++CC    L  Y+ +  +YI + +LS       +     + SES  +  +  + +
Sbjct: 110 PCFVFERCCASYFLSDYEKRSRYYIGIFLLSASAGSGFILSYLYHKSESTLIYHTIAL-V 168

Query: 347 SDMSISLMVLDIVDK 303
            +M+ S+ +L IV+K
Sbjct: 169 FNMTFSI-ILVIVEK 182


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 123 DGSHDDEHLERQTAEGS 73
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
           protein F55G11.9 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -1

Query: 524 PSFAFKKCCLFI*LLAYKSKRGFYILNMLSELINMTSLYDQFINMSESKYVRSSFFITIS 345
           P   F+K  + I  +A   KR +Y+  + S L + +S   +  ++  S+Y  S+  + + 
Sbjct: 812 PRRGFRKVLMVI--IALLQKRAYYLYQLFSSLESDSSKLIEMESLDLSQYPESTILVQVE 869

Query: 344 D 342
           D
Sbjct: 870 D 870


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -1

Query: 410 YDQFINMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNFMLFVKKVGI*ISL 231
           +D F+  ++ KYV+     TISD    L  L  ++   L     VN  +F   +    S+
Sbjct: 351 FDSFVTYTDGKYVQVKVAATISDQH-KLPELAKLNHPTLGEEARVNTNVFNFTME---SV 406

Query: 230 SKGNPRGIVSKHTLHRQAYL 171
              N   +V KH +H  +YL
Sbjct: 407 ENPNVLRVVPKHYVHTTSYL 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,699,114
Number of Sequences: 27780
Number of extensions: 233437
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)