Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B21
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    29   0.37 
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    28   0.65 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   0.65 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.5  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   6.1  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   6.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.0  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 120 SMGFSAYCDGVPDGKAFGCTPYRSTVPPTR 31
           S  F A  D   DGK FG +  +S +PPTR
Sbjct: 317 SFVFQAQNDMQDDGKGFGISNLKSFLPPTR 346


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 472 GETIFSTTPGRKSQFRSHYAVRACPTSKY 386
           GETI       +     HY + ACPTS++
Sbjct: 259 GETILLNEIAPRPHNSGHYTIEACPTSQF 287


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 123 GEDVFDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEK 299
           G++ ++  +   E  S+  EL++   D +RK  T   SSQ  +  E K+  P+ +F  K
Sbjct: 50  GKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPI-AFQHK 107


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 60   GYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSEL 164
            GY+ + F  E+H N LR  +   + F    FW+ L
Sbjct: 975  GYSVLSFFRENHKNSLRKSW---EAFKRRAFWTSL 1006


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/80 (20%), Positives = 27/80 (33%)
 Frame = +1

Query: 109  EAHTSARTSSIPVGSGPNSPASYASWXXXXXXXXXXXXXXXXXLKASKATNTXXXXXXXX 288
            E  +SA TSS+     P S +S +SW                   +S AT +        
Sbjct: 931  ETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSS 990

Query: 289  XXXXTSFQARRDRSLALSIS 348
                ++  +      A S++
Sbjct: 991  VATASATDSSTSSIAAASVT 1010


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 371 PGTERIFGCRTCPDCVM 421
           PGTE   GC TC + VM
Sbjct: 718 PGTEFSLGCDTCLNAVM 734


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 162 LSSELRELDNMLADFYRKF 218
           L S+L EL ++L  FY+KF
Sbjct: 421 LESQLVELQSLLTQFYQKF 439


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 452  NPGTEVPIPFTLRSPGMSYI 393
            NPG +VP+P    S G  Y+
Sbjct: 966  NPGFDVPLPLRASSLGSPYV 985


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 159 ELSSELRELDNMLADFYRKFPT 224
           EL +EL   DN+LA   R+F T
Sbjct: 590 ELKAELNLRDNLLASMQREFET 611


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  LAAAVSAAPYYGMGYNQMPFHPEHHH 98
           ++ A ++AP+   GY     HPE+H+
Sbjct: 194 MSFANTSAPFSTKGYKMKYKHPEYHY 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,572
Number of Sequences: 5004
Number of extensions: 39183
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)