Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B21
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           31   0.65 
07_03_0067 + 13018729-13019187,13019197-13019901                       28   4.6  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    27   6.0  
05_04_0202 - 19010953-19013355                                         27   8.0  
03_06_0546 - 34646946-34647289,34647542-34647608                       27   8.0  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 51  YGMGYNQMPFHPEHHHNRLRSPY 119
           Y   Y+Q PFHP HHH     P+
Sbjct: 148 YNPYYHQEPFHPPHHHQYNPEPH 170


>07_03_0067 + 13018729-13019187,13019197-13019901
          Length = 387

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 426 VHITQSGHVLHPNILSVPGGCGWGXXADR 340
           V +  S +V+H  I S+ GG GW   A R
Sbjct: 321 VGVVDSEYVMHRGIPSLGGGGGWSASAGR 349


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 432 NSVHITQSGHVLHPNILSVPG 370
           N +H   SGHV HPNIL V G
Sbjct: 532 NDIH--PSGHVRHPNILPVLG 550


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 76  LSIRNTITIG*EAHTSARTS-SIPVGSGPNSPA 171
           LS   T   G E  T  +TS  +PVG GP SPA
Sbjct: 119 LSFLLTDASGAEIRTHRKTSFRVPVGVGPGSPA 151


>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 345 QHXPPTHNPPVQK 383
           QH PP HNPP+++
Sbjct: 124 QHVPPKHNPPMRR 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,260
Number of Sequences: 37544
Number of extensions: 316071
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)