Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B21
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)            29   1.5  
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 28   3.6  
SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  27   8.2  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       27   8.2  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             27   8.2  

>SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)
          Length = 93

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 51  YGMGYNQMPFHPEHHHNRLRSP 116
           Y   Y+  PFHP HH  R R P
Sbjct: 30  YFYRYHHRPFHPHHHRIRRRPP 51


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 399 LHPNILSVPGGC-GWGXXADRQC*RPVASGLKRCPSHQRRLK 277
           L P ++ +P    G+   AD QC      G KRCP  Q  +K
Sbjct: 333 LPPKLIKIPSRPPGFNIDADEQCTMMYGRGYKRCPITQWCMK 374


>SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 27  AAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSS 170
           A +S AP Y   +   PF P  H+      + G ++F  GR +  L S
Sbjct: 76  AGISLAPLYYTAFTNAPFPPRDHYQYYIFVFLGGELF--GRSYLVLMS 121


>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   ALFVLCLAAAVSAAPYYGMGYNQMPF 80
           +LF+LC+ A+   APY+   Y    +
Sbjct: 806 SLFLLCIQASAVRAPYFSCAYRHQQY 831


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 135 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 251
           FD     SE  S +REL +   D +RK  TPA+++  I+
Sbjct: 11  FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 49


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 135 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 251
           FD     SE  S +REL +   D +RK  TPA+++  I+
Sbjct: 683 FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 721


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,902
Number of Sequences: 59808
Number of extensions: 343200
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)