Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B21
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical ...    32   0.19 
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U58756-3|AAC48084.2|  181|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U58756-2|AAC48083.2|  322|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    27   9.5  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    27   9.5  

>AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical
           protein Y62H9A.4 protein.
          Length = 212

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 3   ALFVLCLAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 182
           ALF+  +A AV  +      Y  +  +P HH N   + Y   D  D+    +EL S    
Sbjct: 3   ALFLSVIACAVVVSANQYNDYGTISHYPGHHSN---NRYSTSDSSDSSE--NELKSRSNS 57

Query: 183 LDNMLADFYRKF-PTPASSSQGIEGNEYK 266
            D    ++   + P P +++ G  GNEY+
Sbjct: 58  -DERYPEYPGVYAPQPPATNYGTNGNEYR 85


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical protein
            C11E4.6 protein.
          Length = 1170

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 86   RMERHLVVPHTVVRCRRHGRSKTENK 9
            RM++ L +  T+VRCR + +  TEN+
Sbjct: 1143 RMDKSLPIEGTMVRCRHNSQQTTENQ 1168


>U58756-3|AAC48084.2|  181|Caenorhabditis elegans Hypothetical
           protein F58F9.3a protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 177 RELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKDI 305
           +  D +L      F +  +++QG+E   YK+T+      EKD+
Sbjct: 93  KNADGILVFSTNNFASAKATNQGLEIGRYKITVQAVKPSEKDL 135


>U58756-2|AAC48083.2|  322|Caenorhabditis elegans Hypothetical
           protein F58F9.3b protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 177 RELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKDI 305
           +  D +L      F +  +++QG+E   YK+T+      EKD+
Sbjct: 93  KNADGILVFSTNNFASAKATNQGLEIGRYKITVQAVKPSEKDL 135


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 209 VEVGEHVVQLA*LAGEFGPEPTGIEDVLAEVWASQPIVMVFRMER 75
           + VG   +Q++ +  + GP   GI D      +S P + +FR++R
Sbjct: 797 IPVGTSFLQVSAIDADIGPN--GIVDYFLNESSSSPSIQLFRLDR 839


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 209 VEVGEHVVQLA*LAGEFGPEPTGIEDVLAEVWASQPIVMVFRMER 75
           + VG   +Q++ +  + GP   GI D      +S P + +FR++R
Sbjct: 797 IPVGTSFLQVSAIDADIGPN--GIVDYFLNESSSSPSIQLFRLDR 839


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
           protein FMI-1 protein.
          Length = 2596

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 209 VEVGEHVVQLA*LAGEFGPEPTGIEDVLAEVWASQPIVMVFRMER 75
           + VG   +Q++ +  + GP   GI D      +S P + +FR++R
Sbjct: 797 IPVGTSFLQVSAIDADIGPN--GIVDYFLNESSSSPSIQLFRLDR 839


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,639
Number of Sequences: 27780
Number of extensions: 239670
Number of successful extensions: 731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)