Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B21
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    29   2.2  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    29   2.2  
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)...    29   2.2  
At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein...    28   3.8  
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    28   3.8  
At2g18890.1 68415.m02204 protein kinase family protein contains ...    27   5.1  
At1g53040.2 68414.m06006 expressed protein contains Pfam profile...    27   5.1  
At1g53040.1 68414.m06005 expressed protein contains Pfam profile...    27   5.1  
At5g67150.1 68418.m08465 transferase family protein similar to a...    27   6.7  
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    27   6.7  
At3g05680.1 68416.m00634 expressed protein                             27   6.7  
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138...    27   6.7  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    27   8.9  

>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 27  AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 119
           A +  +PYY  GY+ Q P  P  HH+ L  PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 45  PYYGMGYNQMPFHPE-HHHNRLRSPYF 122
           PY    +   P++P+ HHH R  SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 27  AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 119
           A +  +PYY  GY+ Q P  P  HH+ L  PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217



 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 45  PYYGMGYNQMPFHPE-HHHNRLRSPYF 122
           PY    +   P++P+ HHH R  SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232


>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 366

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 144 GRFWSELSSELR-ELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKD 302
           G  WS+++S L    DN + + +          +GI+ N +K    + SF +KD
Sbjct: 86  GNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKD 139


>At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein
           similar to SP|O43196 MutS protein homolog 5 {Homo
           sapiens}; contains Pfam profile PF00488: MutS domain V
          Length = 321

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 138 DTGRFWSELSSELRELDNMLADFYRK 215
           +T RF+   +S+ RELDN+L D Y K
Sbjct: 4   ETQRFFYH-TSKTRELDNLLGDIYHK 28


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1218

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 21   LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 182
            L    +  PY+     Q   HP  HH      Y+  DV D  R W+   ++ RE
Sbjct: 1124 LVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDR-RMWTRERTKARE 1176


>At2g18890.1 68415.m02204 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 392

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 408 GHVLHPNILSVPGGC 364
           GHV HPN+LS+ G C
Sbjct: 121 GHVSHPNVLSLLGCC 135


>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 338 CLSAXXPHPQPPGTERIFGCRTCPDCVM*TELGL 439
           C S   P P PPG  R  G R CP C +  E  L
Sbjct: 119 CDSFSFPPPPPPGMRRP-GPRPCPVCYLPPEEAL 151


>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 338 CLSAXXPHPQPPGTERIFGCRTCPDCVM*TELGL 439
           C S   P P PPG  R  G R CP C +  E  L
Sbjct: 119 CDSFSFPPPPPPGMRRP-GPRPCPVCYLPPEEAL 151


>At5g67150.1 68418.m08465 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 132 VFDTGRFWSELSSELRELDNML-ADFYRKFPTPASSSQGIEGNEYKVTIPL 281
           V D   FWS  ++      N   AD  RKFP        ++G EY + IPL
Sbjct: 169 VADGSSFWSFFNTWSEICFNGFDADHRRKFPPLLLRGWFLDGIEYPIRIPL 219


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 90  VPDGKAFGCTPYRSTVPP 37
           V DGK + C+P + TVPP
Sbjct: 360 VKDGKDWDCSPLQPTVPP 377


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 126  EDVFDTG---RFWSELSSELRE-LDNMLADFYRKFPTPASSSQGIEGNEYKVTIP 278
            +D++  G   +FW E    L E L        RK PT  SSS+  +G    V IP
Sbjct: 1400 DDLYQRGLEDKFWWECPETLPERLPQSSLPAKRKLPTLESSSRRAKGENSSVDIP 1454


>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 567

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 90  HHHNRLRSPYFGEDVFDTGRFWSELSSELRELDNM 194
           H+H+  R P    D++D   F S LS+++R +D +
Sbjct: 193 HYHSIWRDPSKFGDIYDEEFFVSTLSNDVRVVDTI 227


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
            SP|O43520]; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1228

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 21   LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 182
            L    +  PY      Q   +P  HH      Y+G D+ D  R W+   ++ RE
Sbjct: 1134 LVTVAAVLPYVAHIAFQRFLNPLDHHIIQEIKYYGRDIED-ARLWTRERTKARE 1186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,124
Number of Sequences: 28952
Number of extensions: 227502
Number of successful extensions: 760
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)