Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B19
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.5
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 26 3.3
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 3.3
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 26 4.3
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 5.7
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 5.7
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 5.7
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 7.5
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 10.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 10.0
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 47 DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKI 220
D +R +D + ++ L Y +A+ V + + A W NIN NE + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 117 WKYNKEISICFFANST 70
WKYN ++ C+ NST
Sbjct: 116 WKYNPDLDYCYLDNST 131
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 78 NSTESSVLTGSHNPGAKMSANTNKLK 1
N +SS L H+P + M +NT KL+
Sbjct: 88 NDLDSSKLRRPHHPNSIMGSNTGKLR 113
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 53 VRTDDSVEFAKKQIDISLLYF 115
++ D +V+ +KKQI SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 73 RVREKADRYFLIILPCSRTKSRFEIYNYF 159
++R+ A + II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 65 DSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVK 217
+S+ K + S+L + A++ N+ + S+ WSI N + Y+N +K
Sbjct: 98 NSIHNQLKDLSSSILSY-AQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLK 147
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 158 SASWSIENNINHYKNETAVKI 220
+ SWS ++ HYKNE A I
Sbjct: 276 NGSWSSTDDTKHYKNEWAESI 296
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.4 bits (53), Expect = 5.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 446 GYAIPPIYEVLPEYFNNGEILHTAQ 520
GY +PP+Y++ + + E+L +Q
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQ 690
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 440 LEGYAIPPIYEVLPEYFNNGEILHTAQRDWSSRD 541
LEG +P + +VLPE N E + ++ SS D
Sbjct: 43 LEGSPLPTVSDVLPETNNAHEEVSSSSWSLSSSD 76
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = +1
Query: 88 ADRYFLIILPCSRTKSRFEIYNYFR 162
A++Y + + PC+ T +FE++ ++
Sbjct: 94 AEKYSVTMEPCTYTDEKFEVFKKYQ 118
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 10.0
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +2
Query: 44 CDPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNET 208
C P+ DDS+ K+ D LL F E HVS + ++A W E NI+ ET
Sbjct: 178 CAPIDLDDSII---KRDD--LLSFCNVEV-HVSPNAILNACWLSERNIHTDLYET 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,503
Number of Sequences: 5004
Number of extensions: 50966
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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