Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B19
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 449 YAIPPIYEVLPEYFNNGEILHTAQRDWSS 535
           YA+P  +  LP+Y  N  +L+ A  +W+S
Sbjct: 661 YAVPVFHNALPQYLKNELLLYKA-AEWNS 688


>SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 449 YAIPPIYEVLPEYFNNGEILHTAQR 523
           YA+P  Y  LP+Y NN E++   +R
Sbjct: 9   YAVPVFYNALPQYLNN-ELVRIEKR 32


>SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 290 HQFEAVIMFNVLYSAKDYDTFYKTTVY--MKDRVNQDLYIYVLSTLHIHR 433
           HQF   I+F+ ++    Y TF +        DR+  DL +Y +S   I R
Sbjct: 9   HQFPFNILFHKMFITHFYSTFIELAQLHDQHDRLELDLILYAISDALIIR 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,140,802
Number of Sequences: 59808
Number of extensions: 342820
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)