Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B16
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   168   4e-43
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   164   9e-42
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   163   1e-41
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.62 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.3  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   4.4  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.8  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   5.8  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    25   7.7  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  168 bits (409), Expect = 4e-43
 Identities = 77/130 (59%), Positives = 100/130 (76%)
 Frame = +3

Query: 174 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 353
           ++++A  KKR+ I KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRG
Sbjct: 40  EKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRG 99

Query: 354 VNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKR 533
           +N + PK RK++QL RL QINNGVFV+ NKAT  ML++  PY+ +G PNLK+VREL+YKR
Sbjct: 100 INNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKR 159

Query: 534 GFAELNGKRV 563
           GF ++N +R+
Sbjct: 160 GFGKVNKQRI 169


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  164 bits (398), Expect = 9e-42
 Identities = 74/130 (56%), Positives = 99/130 (76%)
 Frame = +3

Query: 174 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 353
           +++SA  KKR+ I KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRG
Sbjct: 39  EKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRG 98

Query: 354 VNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKR 533
           +N + PK RK++QL RL QINNG+FV+ NKA   ML++  PY+ +G PN K+VREL+YKR
Sbjct: 99  INNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKR 158

Query: 534 GFAELNGKRV 563
           GF ++N +R+
Sbjct: 159 GFGKVNKQRI 168


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  163 bits (397), Expect = 1e-41
 Identities = 75/131 (57%), Positives = 97/131 (74%)
 Frame = +3

Query: 171 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 350
           + ++ A  K RKE FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 351 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYK 530
           GV  + PK+RKVL+L RL +INN VFVR NKA   MLRI  PY+ +G PNL SVREL+YK
Sbjct: 97  GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYK 156

Query: 531 RGFAELNGKRV 563
           RGF ++NG+R+
Sbjct: 157 RGFGKINGQRI 167


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 189 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 302
           S+K+ +EI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 285  ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 404
            + N+G YY  G   +AFV  I GV + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 59  KPVKGKEDSKKLPAVPESVLKHPYKEGGTPSSPSSDHTQEAFRF 190
           +P    + S K P+ P+S+L+H    G T +    D  +E F +
Sbjct: 703 QPAAAIKASLKYPSHPDSLLEHQDHAGDTENEMHDDVDKEQFGY 746


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 219 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 320
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 412 STTACSFVSTRPQ*TCFVSLSPISHGAIPT*RVSESWCTNAVS 540
           S T   F +T PQ  C++  SP     +      E++   AVS
Sbjct: 490 SDTQMIFATTFPQDMCYLKFSPFDASTVDWKNSKEAFSNEAVS 532


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 149 SECLPPYTDASRLIPEQLATS 87
           + C+PP T AS L+P +  T+
Sbjct: 660 TNCIPPVTQASSLVPSKNNTA 680


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 293
           R  S K ++E  +R +QYV E    E+D+I + +  ++
Sbjct: 67  RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 101 QLATSYCPLYPSQVFCRHAAFSSVVATIVLWD 6
           +L  + C LY S      ++  SVV TIVL++
Sbjct: 58  ELQNALCELYLSSATTNDSSLLSVVPTIVLFE 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,089
Number of Sequences: 5004
Number of extensions: 42808
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)