Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B16
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 168 2e-42
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 168 3e-42
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 90 1e-18
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 0.48
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 3.4
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463... 28 5.9
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 27 7.8
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 168 bits (409), Expect = 2e-42
Identities = 75/131 (57%), Positives = 104/131 (79%)
Frame = +3
Query: 171 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 350
L + +++ RK IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIR
Sbjct: 34 LAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIR 93
Query: 351 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYK 530
G+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR PY+A+GYPNLKSVREL+YK
Sbjct: 94 GINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYK 153
Query: 531 RGFAELNGKRV 563
RG+ +LN +R+
Sbjct: 154 RGYGKLNKQRI 164
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 168 bits (408), Expect = 3e-42
Identities = 75/128 (58%), Positives = 102/128 (79%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ SI+ RK IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRG+N
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK RK+LQL RLRQI NGVF+++NKAT+NMLR PY+A+GYPNLKSVREL+YKRG+
Sbjct: 96 AMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 155
Query: 540 AELNGKRV 563
+LN +R+
Sbjct: 156 GKLNKQRI 163
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 89.8 bits (213), Expect = 1e-18
Identities = 47/128 (36%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Frame = +3
Query: 174 KRRSASIKKRKE----IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLA 332
+R++A ++R++ KR E +V+E+R KE D +R+ + + R P E +KL
Sbjct: 32 ERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLV 89
Query: 333 FVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSV 512
F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + P+I +G+PNLK+V
Sbjct: 90 FAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNV 149
Query: 513 RELVYKRG 536
++L+YK+G
Sbjct: 150 KDLIYKKG 157
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 356 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 201
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 196 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 300
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>10_08_0139 +
15145310-15145622,15145820-15145881,15145975-15146355,
15146413-15146929,15147031-15147161
Length = 467
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 356 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 201
DTTN +K G+ A++ ++S +S I +LDA ++ G ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 71 GKEDSKKLPAVPESVLKHPYKEGGTPSSPS 160
G+ D+K P P S +KH + GG P PS
Sbjct: 173 GQADAKSTPLQPPSQVKHGW--GGMPGRPS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,026
Number of Sequences: 37544
Number of extensions: 287085
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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