Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B16
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 171 4e-43
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 171 4e-43
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 168 3e-42
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 168 3e-42
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 168 3e-42
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 164 3e-41
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 94 7e-20
At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 0.70
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 1.6
At3g52860.1 68416.m05825 expressed protein 29 2.1
At5g45310.1 68418.m05562 expressed protein 28 3.7
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing... 28 5.0
At1g10380.1 68414.m01169 expressed protein 28 5.0
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 28 5.0
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 27 6.5
At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof... 27 8.7
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 8.7
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 171 bits (415), Expect = 4e-43
Identities = 77/128 (60%), Positives = 102/128 (79%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ S++ RK IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK +K+LQL RLRQI NGVF+++NKATVNMLR PY+ +GYPNLKSV+EL+YKRG+
Sbjct: 99 AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 158
Query: 540 AELNGKRV 563
+LN +R+
Sbjct: 159 GKLNHQRI 166
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 171 bits (415), Expect = 4e-43
Identities = 77/128 (60%), Positives = 102/128 (79%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ S++ RK IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK +K+LQL RLRQI NGVF+++NKATVNMLR PY+ +GYPNLKSV+EL+YKRG+
Sbjct: 94 AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 153
Query: 540 AELNGKRV 563
+LN +R+
Sbjct: 154 GKLNHQRI 161
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 168 bits (408), Expect = 3e-42
Identities = 76/127 (59%), Positives = 102/127 (80%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGIN 95
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR PY+ +GYPNLKSV+EL+YKRGF
Sbjct: 96 AIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Query: 540 AELNGKR 560
+LN +R
Sbjct: 156 GKLNHQR 162
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 168 bits (408), Expect = 3e-42
Identities = 76/127 (59%), Positives = 102/127 (80%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGIN 95
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR PY+ +GYPNLKSV+EL+YKRGF
Sbjct: 96 AIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Query: 540 AELNGKR 560
+LN +R
Sbjct: 156 GKLNHQR 162
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 168 bits (408), Expect = 3e-42
Identities = 76/127 (59%), Positives = 102/127 (80%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 36 KKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGIN 95
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR PY+ +GYPNLKSV+EL+YKRGF
Sbjct: 96 AIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Query: 540 AELNGKR 560
+LN +R
Sbjct: 156 GKLNHQR 162
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 164 bits (399), Expect = 3e-41
Identities = 74/128 (57%), Positives = 101/128 (78%)
Frame = +3
Query: 180 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 359
+ + + RK IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 34 KKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 360 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGF 539
+ PK +K+LQL RLRQI NGVF+++NKAT+NMLR PY+ +G+PNLKSV+EL+YKRG+
Sbjct: 94 AIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGY 153
Query: 540 AELNGKRV 563
+LN +R+
Sbjct: 154 GKLNHQRI 161
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 93.9 bits (223), Expect = 7e-20
Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +3
Query: 195 KKRKEI--FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVS 368
KK+K++ KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N +
Sbjct: 41 KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMH 100
Query: 369 PKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIA*PYIAWGYPNLKSVRELVYKRGFAEL 548
PK +++L +L+ + GVF + + L PY+ +GYPN KSV++L+YK+G +
Sbjct: 101 PKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTII 160
Query: 549 NGKRV 563
G V
Sbjct: 161 EGNPV 165
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 30.7 bits (66), Expect = 0.70
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 260 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 156
TL A+ + ++F +L +F PLL+G+G PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 370 GDTWLTPRIRMTNASLASPGT 308
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 171 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 269
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 201 RKEIFKRAEQYVKEYRIKERD 263
RKEI K + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127
>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
protein / CBS domain-containing protein similar to
SP|Q47334 Polysialic acid capsule expression protein
kpsF {Escherichia coli}; contains Pfam profiles PF01380:
sugar isomerase (SIS) domain, PF00571: CBS domain
Length = 350
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 323 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 171
+F + + T+ SLS +S F++ LDA+ DI S +D + SG E
Sbjct: 80 AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130
>At1g10380.1 68414.m01169 expressed protein
Length = 305
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 209 FFPLLNGSGTPLECDLKTASSECLPPYTDASRLIPEQLATSYCPLY 72
F PL NGSG CD + +SS C Y++ + L S C +Y
Sbjct: 135 FTPLSNGSGRVSLCD-RQSSSICTFLYSNCRAISLINLQVSTCCVY 179
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 50 ADKKPVKGKE-DSKKLP-AVPESVLKHPYKEGGTPSSPSSDHTQEA 181
A+ P K + D+ K P + P+S P K G P++P+S TQ +
Sbjct: 234 AESNPPKSSDPDNPKPPQSDPQSNRNEPLKFGNFPNTPNSKKTQSS 279
>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 579
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 204 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 383
KEI ++ + V E IK +D + R+ +RG Y V++I Q+ + R+
Sbjct: 295 KEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSRE 354
Query: 384 V 386
+
Sbjct: 355 I 355
>At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 333
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 293 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 159
V +SC+S FI D ++ S+ + +LNG G P DLK
Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +3
Query: 174 KRRSASIKKRKEIFKRAEQYVK----EYRIKERDEI-RLARQARNR 296
KRR +KR+E KR E+ K E + KER+E+ R R+ + R
Sbjct: 556 KRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQER 601
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,114
Number of Sequences: 28952
Number of extensions: 228742
Number of successful extensions: 675
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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