Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B15
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 28 1.0
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 28 1.0
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 27 1.4
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 2.4
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 3.2
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 26 3.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.2
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 4.2
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 5.6
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 25 5.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.3
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 9.7
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 9.7
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 9.7
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 297 TLVEWVYARWYNTSSAGTTRVSPVRWKTVLSNTSINNMSISPIPA 431
TL V +W N S T PV + + N SI+ MS IP+
Sbjct: 71 TLRTEVVLQWANIESQKGTLSLPVEYNELEGNVSIDRMSFWQIPS 115
>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 27.9 bits (59), Expect = 1.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 465 CLDIAHNSCLPHWKSTRIQEVLN 533
C+D+ + C+P +ST I++V+N
Sbjct: 99 CMDVVGSKCIPTLQSTDIEKVVN 121
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 329 VPSRINPLHQRAGILLLQVLRP 264
+P+ INPL Q LL QVLRP
Sbjct: 636 LPTLINPLDQSLRDLLFQVLRP 657
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 53 WIEEPTSPDDVLGHATISKALKPYGIGVATGE 148
W + P P +T +ALKPY +GVAT E
Sbjct: 500 WFKGPLRPVS----STTLQALKPYNLGVATVE 527
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -2
Query: 333 CCTISHKPTPPACGHTFTPSFAAIR*TDKISLMPPMRAESI 211
C +++KP C H F I K+ P RA+ +
Sbjct: 363 CSNVAYKPVRLGCSHVFCLHCLIILQKQKVDFCPLCRAKEV 403
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 360 SPVRWKTVLSNTSINNMSISPIPASLRMLDILRLNCLDIA 479
SP+ WKT + + S +N S + +L + + N A
Sbjct: 12 SPMEWKTYMKSLSDDNPSFGDVTVNLTKISVSSKNAKSYA 51
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 550 FNHSFPFRTSWI 515
FNH PFR SWI
Sbjct: 410 FNHCIPFRLSWI 421
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 384 LSNTSINNMSISPIPASLRM----LDILRLNCLDIAHNSCLPHW 503
L N ++ S +PAS+ L I ++ C HN CL W
Sbjct: 25 LPNCPLDQWDSSSVPASISSTLDGLRIAKIPCGHYFHNHCLESW 68
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 477 LYPGNLGARYLAFSTMQGSVKCSCC*SMYSIRRSSIVPETLV*SQHWRC 331
L+PG LG R+ + V ++S S+ PE + Q + C
Sbjct: 342 LFPGTLGGRFTTIEGLLAQVYDELYGRVFSQETDSMTPEQVANWQQFLC 390
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 186 CRNCLNRTRFAHI 148
CR+C NRTRF+ +
Sbjct: 1170 CRSCQNRTRFSQV 1182
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 206 NTASHRFVGTV*IGLDLRTSHQWQHQYRMALKLSISWRVPVHH 78
+TAS + G +G+DL + HQ + SI+ + HH
Sbjct: 626 STASFQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHH 668
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 330 NTSSAGTTRVSPVRWKTVLSNTSINNMSISPIPAS 434
N S T V + V+SN +N+ S P P S
Sbjct: 216 NPSPEDTVAFQSVELQKVISNNRLNSSSTPPTPRS 250
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 549 LIIRFHSEPLG-YVYFSNVAGKNCVLYPGNLG 457
L + +P G Y++ + AG NC+ P + G
Sbjct: 96 LTYKIFLDPSGHYIFVTTTAGDNCLFTPSHQG 127
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 436 NDAGIGEMLMLLIDVFDKTVFHRTGD 359
ND+G L LLIDV+ + +F D
Sbjct: 487 NDSGYWFQLQLLIDVYSRMLFTMIDD 512
>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 125
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = -2
Query: 339 WRCCTISHKPTPPACGH-TFTPSFAAIR*TDKISLMPPMRAESIWQYCIAPLCRN 178
+RC K H + P F IR TD IS E +APL N
Sbjct: 70 YRCSLKETKCIDVIVSHNSLAPQFTEIRYTDGISAKAENTDEMTMHIALAPLTEN 124
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 381 VLSNTSINNMSISPIPASLRMLDILRLNCLDIAHNS 488
++S++ + + S SPIP+S ++ + +I H+S
Sbjct: 685 IVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSS 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,334
Number of Sequences: 5004
Number of extensions: 58577
Number of successful extensions: 195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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