Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_B15
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0117 + 815590-815884,816347-816393 32 0.35
03_05_0618 + 26177743-26178420,26179477-26179617 31 0.61
02_04_0142 + 20167876-20169108 30 1.4
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 29 1.8
06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472... 29 2.4
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 29 2.4
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482... 29 3.2
02_02_0101 - 6788090-6788356,6788770-6788940 28 5.6
01_06_0278 - 28111655-28112531,28113896-28114029,28114131-281149... 28 5.6
12_02_0176 + 14933044-14934438 27 7.5
03_06_0024 + 31103185-31104579 27 7.5
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 27 9.9
06_02_0186 + 12787866-12788055,12788575-12788642,12788864-127890... 27 9.9
>05_01_0117 + 815590-815884,816347-816393
Length = 113
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 255 TDKISLMPPMRAESIWQYCIAPLCRNCLNRTRFAHISPVATPIPYGFKAFDIV 97
T+ ++ + AE + Q C A C+ R+AH+SP+ +P G IV
Sbjct: 39 TNNLTHLRLTMAERLGQNCDAGQITLCVRAGRYAHLSPLLVDLPMGNNPIHIV 91
>03_05_0618 + 26177743-26178420,26179477-26179617
Length = 272
Score = 31.1 bits (67), Expect = 0.61
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 216 SIWQYCIAPLCRNCLNRTRFAHISPVATPIPYGFKAFDIVACPSTSS 76
++ + C A L L RFA ++ +A P+G ++ D+ CP T +
Sbjct: 98 AVAESCGATLRHLDLGNNRFADVAELAPLAPHGVESLDLYQCPVTKA 144
>02_04_0142 + 20167876-20169108
Length = 410
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/42 (21%), Positives = 25/42 (59%)
Frame = +2
Query: 317 CEMVQHLQCWDYTSVSGTMEDRLIEYIDQQHEHFTDPCIVEN 442
C++V+H + + +SG +++ ++++ +H H+ + C N
Sbjct: 182 CQVVEHPELLEGMRLSGKLKEEARKHLNSKHLHYEEMCSYHN 223
>02_01_0331 +
2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 532 FRTSWIRVLFQCGRQELCAISRQFRRKISSILNDAGIGEMLMLL 401
F +S +R++FQ +ELC S R ++ + +DAGIG + L+
Sbjct: 92 FPSSGLRLVFQ---EELCPFSFLCARFLNELRDDAGIGRLWSLV 132
>06_01_0653 -
4720913-4721152,4721898-4721966,4722059-4722124,
4722814-4722879,4723001-4723162,4723255-4723347,
4723449-4723541,4723626-4724273
Length = 478
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 132 VLPLVRCAQIESYSNSSYKAVRCSIARSTRPASEASTKF 248
VLPL+R +Q E +SN S A S P SE S+ F
Sbjct: 389 VLPLLRESQTECHSNPSLSASTISQGPPDMPDSEDSSAF 427
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 32 LAPLKPIWIEEPTSPDDVLGHATISKALKPYGIGVATGEMCANRVLFK 175
LAP+ P W ++P D G+ +I PY G+ G CA F+
Sbjct: 20 LAPVAPAWAQQPAGCPDKCGNTSI-----PYPFGI--GSRCARDFNFR 60
>06_03_1507 -
30646168-30646254,30646350-30646490,30648109-30648202,
30648445-30648509,30648934-30649176,30649442-30649499,
30649957-30650037,30650323-30650533,30650975-30651141,
30651216-30651268,30651600-30651681,30651765-30651914,
30652027-30652111,30652189-30652393,30652502-30652573,
30652911-30653456
Length = 779
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = +2
Query: 152 CANRVLFKQFLQSGAMQYCQIDSARIGGINEILSVYLMAAKLGVKVCPHAGGVGLCEMVQ 331
C NR +Q S A + I + RI GI+ + ++ + ++ GG LC M
Sbjct: 471 CENR---QQRESSLAYNHNAIAAGRIDGIDPMEQIFTRSIRIATTPVTGFGGCALCSMSG 527
Query: 332 HLQCWDYTSVSGTMEDRLIEYIDQQHE 412
+ S S D + +DQ H+
Sbjct: 528 FMDKQSVLSRSRPDYDDELAVLDQLHD 554
>02_02_0101 - 6788090-6788356,6788770-6788940
Length = 145
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 291 ARTLVEWVYARWYNTSSAGTTRVSPVRWKTVLSNTSINNMSISPIPASLR-MLDILRLNC 467
AR+ + + A +A T +T+ + S +P +S R +L + R NC
Sbjct: 16 ARSPADHIPAAAGTEVTARATTAMEASARTIAEEAVVRAPSANPYNSSERCLLPLARPNC 75
Query: 468 LDIAHNSCLPHWKSTRIQEVLN 533
+AH S + W+ +++N
Sbjct: 76 FPVAHTSFM-SWRDESRPKIVN 96
>01_06_0278 -
28111655-28112531,28113896-28114029,28114131-28114992,
28115636-28115735,28115848-28115939,28116031-28116122
Length = 718
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 32 LAPLKPIWIEEPTSPDDVLGHATISKALKPYGIGVATGEMCANR 163
L + P W + T PD V G A ++ ++ +GV TG A R
Sbjct: 352 LRKINPDWKLDVTVPDYVEGTANLASSMYNQALGVPTGSHGAFR 395
>12_02_0176 + 14933044-14934438
Length = 464
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -1
Query: 472 SRQFRRKISSILNDAGIGEMLMLLIDVFDKTVFHRTGDTRVVPALEVLYHL 320
SR R +SS+ N G+ + +L F K TGDTR PA++V + L
Sbjct: 292 SRFVNRVVSSMFNTVS-GKKIAVLGFAFKKD----TGDTRETPAIDVCHGL 337
>03_06_0024 + 31103185-31104579
Length = 464
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -1
Query: 472 SRQFRRKISSILNDAGIGEMLMLLIDVFDKTVFHRTGDTRVVPALEVLYHL 320
SR R +SS+ N G+ + +L F K TGDTR PA++V + L
Sbjct: 292 SRFVNRVVSSMFNTVS-GKKIAVLGFAFKKD----TGDTRETPAIDVCHGL 337
>07_03_0631 +
20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 375 KTVLSNTSINNMSISPIPASLRMLDILRLNCLD 473
+T + NT++N SI P+ +SLR+LD L+C++
Sbjct: 535 RTTMLNTALN--SILPVSSSLRVLD---LSCIE 562
>06_02_0186 +
12787866-12788055,12788575-12788642,12788864-12789007,
12789112-12789268,12789344-12789366,12789487-12789495,
12789694-12790108,12790449-12790652,12790741-12791201,
12791206-12791476,12791560-12791951
Length = 777
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 283 KSMPARWWSGFMRDGTTPPVLGLHECL 363
K+ PA+WWS F D TP + L CL
Sbjct: 400 KTSPAQWWSMFASD--TPKLKKLALCL 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,710
Number of Sequences: 37544
Number of extensions: 410777
Number of successful extensions: 1245
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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