Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B15
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37664| Best HMM Match : No HMM Matches (HMM E-Value=.)             257   5e-69
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.82 
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)          29   3.3  
SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_37664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score =  257 bits (629), Expect = 5e-69
 Identities = 112/182 (61%), Positives = 137/182 (75%)
 Frame = +2

Query: 2   VNEAIEWMKKLAPLKPIWIEEPTSPDDVLGHATISKALKPYGIGVATGEMCANRVLFKQF 181
           V EAIE+MK LA  KP+WIEEPTSPDDVLGHA ISKAL PYGI VATGE C NRV+FKQF
Sbjct: 37  VPEAIEYMKGLAEFKPVWIEEPTSPDDVLGHAAISKALAPYGISVATGEHCQNRVIFKQF 96

Query: 182 LQSGAMQYCQIDSARIGGINEILSVYLMAAKLGVKVCPHAGGVGLCEMVQHLQCWDYTSV 361
           +Q+   QYCQIDS R+GG+NEI+++ LMAAK GV VCPHAGGVGLCE VQH+  +DY  V
Sbjct: 97  MQAQGFQYCQIDSCRVGGLNEIIAILLMAAKFGVPVCPHAGGVGLCEYVQHISMFDYICV 156

Query: 362 SGTMEDRLIEYIDQQHEHFTDPCIVENARYLAPKLPGYSTQFLPATLEKYTYPRGSEWKR 541
           S ++E+R+ E+ D  HEHF  P +  N  Y  P  PGYS +    +LE+Y +P G+ W+R
Sbjct: 157 SASLENRVTEFADHLHEHFVHPVVATNGSYKVPMAPGYSAEMKSQSLEEYEFPDGAVWRR 216

Query: 542 MI 547
           +I
Sbjct: 217 LI 218


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 342  AGTTRVSPVRWKTVLSNTSINNMSISPIPASLRML 446
            AGT+R +P+ WK  + +   N  S+    A+LR L
Sbjct: 972  AGTSRFNPIMWKFSMKSNQENGESVESFIAALRSL 1006


>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 280 SKSMPARWWSGFMRDGTTPPVLGLHECLRYDGRPSYRIHRS 402
           SK +P ++ +G ++   TPP   + +CL  DG P   +H S
Sbjct: 240 SKLVPQQY-TGSIQTRPTPPFTQVRQCLMQDGVPKQNVHPS 279


>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1963

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 170 IGLDLRTSHQWQHQYRMALKLSISWRV 90
           IG++ RTS  W H   +  KL + WRV
Sbjct: 144 IGVEQRTSGFWSHSLMLRSKLLVLWRV 170


>SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)
          Length = 699

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 387 SNTSINNMSISPIPASLRMLDILRLNCLDIAHNSCL 494
           S+T     +++  P  +   D+LR  CL+I HN CL
Sbjct: 129 SSTKSRGRTVNVAPVQV---DLLRATCLEILHNLCL 161


>SB_12671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 305 GVGLCEMVQHLQCWDYTSVSGTMEDRLIEYIDQQHEHF 418
           G G   MV   +CW Y  V+G + DR +     +HEHF
Sbjct: 309 GGGGYNMVNTSRCWTY--VTGVILDRPLPRDIPEHEHF 344


>SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 279 PSFAAIR*TDKISLMPPMRAESIWQYCIAPLCRNCLNRTRFAHISPVATPIPY 121
           P F     TD I  +P     SI  + +      C  R    +  P+A PIPY
Sbjct: 797 PVFTTFGCTDTILFVPSADPTSIHDFWLYRYHTICTKRRSNQYSRPMAVPIPY 849


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,140,382
Number of Sequences: 59808
Number of extensions: 467457
Number of successful extensions: 1264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)