Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B15
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    37   0.010
At1g53380.1 68414.m06051 expressed protein contains Pfam profile...    29   1.5  
At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At4g05350.1 68417.m00817 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    29   2.7  
At2g26510.1 68415.m03181 xanthine/uracil permease family protein...    29   2.7  
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    28   3.6  
At4g12210.1 68417.m01938 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    27   8.3  
At4g29550.1 68417.m04214 expressed protein contains Pfam profile...    27   8.3  
At3g09340.1 68416.m01108 amino acid transporter family protein l...    27   8.3  
At3g09330.1 68416.m01107 amino acid transporter family protein b...    27   8.3  
At2g46225.1 68415.m05748 expressed protein                             27   8.3  

>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = +2

Query: 8   EAIEWMKKLAPLK--PIWIEEPTSPDDVLGHATISKALKP-YGIGVATGEMCANRVLFKQ 178
           EA++ ++ L  +K  P+  E+P   D+  G + +++  K  +G+ +A  E C      K+
Sbjct: 244 EAVKVLETLHEMKVTPVLFEQPVHRDNWEGLSHVTRTAKNRFGVSIAADESCRGLTDLKK 303

Query: 179 FLQSGAMQYCQIDSARIGGINEILSVYLMAAKLGVKV 289
            ++   +    I  A+  GI E L V  +A   G+++
Sbjct: 304 IIEGNIVDVVNIKLAKT-GILESLEVIELARSSGIEL 339


>At1g53380.1 68414.m06051 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 453

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = +2

Query: 149 MCANRVLFKQFLQSGAMQYCQ-IDSARIGGINEILSVYLMAAKLGVKVCPHAGGVGLCEM 325
           M  N++  K+  QSG  Q C  +D+  +  +N    V      L   V    G V L   
Sbjct: 178 MKQNKLTEKRLNQSG--QLCNPLDNLHLSALNPTHFV----TYLHHTVKSTRGFVKLMIE 231

Query: 326 VQHLQCWDYTSVSGTMEDRLIEYIDQQHEHFTDPCIVENARYLAPKLPGYST 481
              L  WD +S + ++   +  Y  Q H+ FT    V N  + A  LP +ST
Sbjct: 232 QMKLAGWDISSAANSIHPGVF-YYKQDHKCFTFEHFVSNVMFEAFHLPYFST 282


>At4g12190.1 68417.m01936 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 71

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 354 RVSPVRWKTVLSNTSINNMSISPIPASLRMLDILRLNCLDIAHNSCLPHW 503
           R+     K++   T   ++ +  + +  +  DI R+ C  + HN CL  W
Sbjct: 6   RIKTEELKSLKMETEPCSICLESLVSGPKPRDITRMTCSHVFHNGCLLEW 55


>At4g05350.1 68417.m00817 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHG1a [Arabidopsis thaliana] GI:3822225; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 206

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +3

Query: 354 RVSPVRWKTVLSNTSINNMSISPIPASLRMLDILRLNCLDIAHNSCLPHW 503
           R+    +K++   T   ++ +  + +  +  D+ R+ C  + HN CL  W
Sbjct: 141 RMKAEEFKSLKMETEPCSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEW 190


>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
           similar to exostose-related protein 2, Homo sapiens,
           PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
           [GI:10443633]
          Length = 334

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +3

Query: 225 ASEASTKFYPFI*WPQNLE*KYARTLVEWVYARWYNTSSAGTTRVSPVRWKTVLSNTSIN 404
           A +    F P + WP+    K       + Y+ W++   +GT   S V  K    +    
Sbjct: 186 APDTMVGFVPRVHWPEKSNDKANY----YTYSGWWSVWWSGT--YSMVLSKAAFFHKKYL 239

Query: 405 NMSISPIPASLRMLDILRLNCLDIA 479
           ++  + +PAS+R       NC DIA
Sbjct: 240 SLYTNSMPASIREFTTKNRNCEDIA 264


>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 551

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 318 HKPTPPACGHTFTPSFAAIR*TDKISLMPPMRAESIWQYCI 196
           H P P A GH   PS A  R  +  +  PP       QYCI
Sbjct: 10  HPPAPAAAGHPPVPSMAMAR--NMGTTWPPAEQLHHLQYCI 48


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 147 SPVATPIPYGFKAFDIVACPSTSSGEVGSS 58
           SPV+T +P G  +    A P++SSG  GS+
Sbjct: 42  SPVSTLMPRGSASSSAAATPTSSSGSSGSA 71


>At4g12210.1 68417.m01938 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHG1a [Arabidopsis thaliana] GI:3822225; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 203

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +3

Query: 354 RVSPVRWKTVLSNTSINNMSISPIPASLRMLDILRLNCLDIAHNSCLPHW 503
           R+     K++   T   ++ +  + +  +  D+ R+ C  + HN CL  W
Sbjct: 137 RIKAEELKSLKMETESCSICLENLVSGPKPSDLTRMTCSHVFHNPCLLEW 186


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 345 GTTRVSPVRWKTVLSNTSINNMSISPIPASLRMLDILRLNCLDIAHNS 488
           G+ RV PV   +VLS     N+S +    ++       L  LD++HNS
Sbjct: 118 GSIRVIPVNG-SVLSAVKELNLSFNRFKHAVNFTGFTNLTTLDLSHNS 164


>At4g29550.1 68417.m04214 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 358

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 17  EWMKKLAPLKPIWIEEPTSPDDVLGHATISK 109
           EW+ K  P    W +E    DDV   + ISK
Sbjct: 29  EWLNKHPPSGSGWTDEDDDNDDVFSSSFISK 59


>At3g09340.1 68416.m01108 amino acid transporter family protein low
           similarity to vesicular GABA transporter [Rattus
           norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 528

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 182 LQSGAMQYCQIDSARIGGINEILSVYLMAAKLGVKVCPHAGGVGLCEMVQHLQCWDYTSV 361
           L  G   +C    + + GIN +  + L+     VK     G +GLC ++       YT +
Sbjct: 126 LSYGEPNFCSFPQSVLNGINVLCGISLLTMPYAVK---EGGWLGLCILLSFAIITCYTGI 182


>At3g09330.1 68416.m01107 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 524

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 182 LQSGAMQYCQIDSARIGGINEILSVYLMAAKLGVKVCPHAGGVGLCEMVQHLQCWDYTSV 361
           L  G   +C    + + GIN +  + L+     VK     G +GLC ++       YT +
Sbjct: 126 LSYGEPNFCSFPQSVLNGINVLCGISLLTMPYAVK---EGGWLGLCILLSFAIITCYTGI 182


>At2g46225.1 68415.m05748 expressed protein
          Length = 298

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 317 CEMVQHLQCWDYTSVSGTMEDRLIEYIDQQHEHFTDPCIVENARYLAP 460
           C   Q L C  Y    G  + +L+  I   H+H+  P  V    + +P
Sbjct: 106 CVSQQLLTCRTYIDKEGLRQQQLLAVIPLHHKHYILPNSVNKRVHFSP 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,911,658
Number of Sequences: 28952
Number of extensions: 317354
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)