Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B13
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    30   0.25 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   1.3  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   7.2  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   9.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   9.5  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 116 PEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 244
           P K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 87  PYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 113 APEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDN 220
           +P+      Q+V Q+N +DEY +   + D EA IDN
Sbjct: 46  SPDLNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 275 DNRFCTISRILQQLSYWCSYRCW 207
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 203 EANIDNYTNKKAVEEFLKLYRIGYLPK 283
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 410 NEGQFL-YAYYIAVIQRNDTHG 472
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 54  VVSPKTYHFKTK-DVDAVFVERQKKVY 131
           V+ PKT+H+K    +   F + QKK++
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKLF 260


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 44  AIQCGVTENVSLQDKRCRRSVCGAPEKGLS-LFQDVDQVNVDDEY 175
           AI   +  N +   ++C+  +CG PE GLS ++ D   +  D+ Y
Sbjct: 113 AITDEIVRNDANVIEQCK--ICGVPESGLSNVYCDPWTIGYDERY 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,688
Number of Sequences: 5004
Number of extensions: 42097
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)