Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B13
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    29   3.1  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   4.1  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   5.5  
02_02_0391 - 9646256-9646528                                           28   5.5  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   7.2  
06_03_1167 + 28111923-28113218                                         27   9.6  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    27   9.6  

>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +2

Query: 14  PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKIGKD 193
           PS +G    RA      +  +  DK+ R+    A   G  +    D + VDD+  +   +
Sbjct: 242 PSPNGRGRKRAPPKVSNDPAAGSDKKPRKRAKKAAAAGSKVTVPADVIIVDDDVNQPSSN 301

Query: 194 YDVEANIDNYTNKKAV 241
            D ++N D+   K AV
Sbjct: 302 TDAQSNADDDLKKAAV 317


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 353 YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 448
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 400 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 254
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


>02_02_0391 - 9646256-9646528
          Length = 90

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 65  ENVSLQDK--RCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKI 184
           +++ ++DK  + +   CG  +KG S+  D+D+   ++E Y +
Sbjct: 33  QHIDIRDKPRQTQYGACGGQQKGSSIIFDLDEFIFEEEDYPV 74


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 378 TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSF*PAPYEVYPQFFVNM 524
           T+ P S  V T +  S+CTH   QLSSA +L         +V   F + +
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELKVSTAFVIKV 114


>06_03_1167 + 28111923-28113218
          Length = 431

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 59  VTENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANI 214
           V  N +  D  C RS        ++  +  D+ N   E   +   YDVEA I
Sbjct: 12  VWNNAAFDDSSCSRSAWLPQSPAVAAVRKGDKENHRPEVVDVAAGYDVEAEI 63


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 328 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 212
           S FP  + E GE+ V GK+ D +       SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,014
Number of Sequences: 37544
Number of extensions: 264077
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)