Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B13
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36805| Best HMM Match : GED (HMM E-Value=0.24)                      30   1.1  
SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)               29   3.2  
SB_20011| Best HMM Match : GED (HMM E-Value=0.65)                      28   5.6  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   5.6  
SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)         27   7.4  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   9.8  

>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 377

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 140 QDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYY 289
           + V QV +  ++ K G+ +D   +I+N  ++K V  +LK Y      KYY
Sbjct: 49  EGVGQVVIHRKFMKPGELFDFPVSIENGKSRKFVSNWLKKYPWLAYSKYY 98


>SB_29641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 59  VTENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVDDEYYKIGKDYD 199
           V  +V  QDK    +VCG+  +G +   D+D +    +Y    ++YD
Sbjct: 90  VLVHVKKQDKNLTATVCGSFRRGATSSGDIDILLSHPDYTSSSQNYD 136


>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 119 EKGLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDNYTNKKAVEEFLKLYRI 268
           E+ +SLF+DVD+   D+ Y KI   Y D+  + ID Y    +   F KL ++
Sbjct: 93  ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144


>SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)
          Length = 337

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +2

Query: 92  CRRSVCGAPEKGL-----SLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 256
           CR   C   + GL     + +   D++   +  +K G+ +D   +I+N  ++K V  +LK
Sbjct: 7   CRTEDCSPYDIGLVFDKIASYSPQDKLKFIENVWKPGELFDFRVSIENGKSRKFVLNWLK 66

Query: 257 LYRIGYLPKYY 289
            Y      KYY
Sbjct: 67  KYPWLAYSKYY 77


>SB_20011| Best HMM Match : GED (HMM E-Value=0.65)
          Length = 427

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +2

Query: 92  CRRSVCGAPEKGL-----SLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 256
           CR+  C   + GL     + +   D++   +  +K G+  D   +I+N  ++K V  +LK
Sbjct: 7   CRKEDCSPYDIGLVFDKIASYSPQDKLKFIENVWKPGELLDFPVSIENGKSRKFVLNWLK 66

Query: 257 LYRIGYLPKYY 289
            Y      KYY
Sbjct: 67  KYPWLAYSKYY 77


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 50  QCGVTENVSLQDKRCRRSVCG 112
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
          Length = 503

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 92  CRRSVCGAPEKGLSLFQDVDQVNVDDEYYK-IGKDYDVEANIDNYTNKKAVEEFL 253
           C  S CG  +KG+S F  V  +NV     K  G     E+++   T  K ++E L
Sbjct: 126 CSYSRCGRTDKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEIL 180


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 12  VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVYPFS 140
           +++LA ++A V   +V+PK    K +D+D  ++E +  VY  S
Sbjct: 618 LVILAMIVAAVVIIIVAPKCAKAKVRDMDKSWLENE-VVYKIS 659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,043
Number of Sequences: 59808
Number of extensions: 328429
Number of successful extensions: 942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)