Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B13
         (540 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.                 30   4.5  
AK090439-1|BAC03420.1| 1056|Homo sapiens FLJ00359 protein protein.     30   4.5  
AK074182-1|BAB85008.1|  733|Homo sapiens FLJ00255 protein protein.     30   4.5  
AK025362-1|BAB15120.1| 1097|Homo sapiens protein ( Homo sapiens ...    30   4.5  
AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.                30   4.5  
AB007890-1|BAA24860.3| 1506|Homo sapiens KIAA0430 protein protein.     30   4.5  

>EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.
          Length = 1866

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRCRRSVCGAPEKGL 130
           ++ CP     HCP A + CG  EN+S + ++C  +   A  + L
Sbjct: 669 FDGCPLEP--HCPEALVGCGQIENLSFKSRKCGDAFAEALSRSL 710


>AK090439-1|BAC03420.1| 1056|Homo sapiens FLJ00359 protein protein.
          Length = 1056

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRCRRSVCGAPEKGL 130
           ++ CP     HCP A + CG  EN+S + ++C  +   A  + L
Sbjct: 396 FDGCPLEP--HCPEALVGCGQIENLSFKSRKCGDAFAEALSRSL 437


>AK074182-1|BAB85008.1|  733|Homo sapiens FLJ00255 protein protein.
          Length = 733

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRCRRSVCGAPEKGL 130
           ++ CP     HCP A + CG  EN+S + ++C  +   A  + L
Sbjct: 682 FDGCPLEP--HCPEALVGCGQIENLSFKSRKCGDAFAEALSRSL 723


>AK025362-1|BAB15120.1| 1097|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21709 fis, clone COL10077. ).
          Length = 1097

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRCRRSVCGAPEKGL 130
           ++ CP     HCP A + CG  EN+S + ++C  +   A  + L
Sbjct: 354 FDGCPLEP--HCPEALVGCGQIENLSFKSRKCGDAFAEALSRSL 395


>AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.
          Length = 1866

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRCRRSVCGAPEKGL 130
           ++ CP     HCP A + CG  EN+S + ++C  +   A  + L
Sbjct: 669 FDGCPLEP--HCPEALVGCGQIENLSFKSRKCGDAFAEALSRSL 710


>AB007890-1|BAA24860.3| 1506|Homo sapiens KIAA0430 protein protein.
          Length = 1506

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +2

Query: 287  YEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFLYAYYIAVIQRNDT 466
            Y   +F     EE + L  L+ +AK+  +   +  + ++ L+E    Y  Y+    +  T
Sbjct: 1232 YLVEVFTNDKMEECVKLTSLYLFAKNVRSLLHTYHYQQIFLHEFSMAYTKYVGETLQPKT 1291

Query: 467  HG 472
            +G
Sbjct: 1292 YG 1293


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,695,638
Number of Sequences: 237096
Number of extensions: 1489670
Number of successful extensions: 2807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2807
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)