Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B13
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    32   0.30 
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    29   2.8  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    28   3.7  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    28   3.7  
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    28   4.9  
U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    27   8.6  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC084153-3|AAK84595.1|  153|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +2

Query: 119  EKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLP 280
            E G S+  DV ++++DD+Y+ +G  +D +   D        + AV  F  L+R    +LP
Sbjct: 2538 EDGDSMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLP 2597

Query: 281  KY 286
             Y
Sbjct: 2598 PY 2599


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
 Frame = +2

Query: 62   TENVSLQDKRCRRSVCGAPEKGLSLFQDVDQVNVD---DEYYKIGKD-----YDVEANID 217
            T  +S ++ R  +  CG   K      D D+V+V+   DE Y++ K      Y  E +  
Sbjct: 1210 TNKMSEEEYRAYKKRCGKERKTPK--PDCDEVDVNKLSDEEYRLYKKRCMSTYTPEDDCS 1267

Query: 218  NYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALF 340
            N   K   E+   +Y+I  LPK  E     +K  E +  +F
Sbjct: 1268 NIRVKDLTEKEYNIYKIWDLPKLTEIFKNLKKKLEHSNPMF 1308


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 324 RLLLFSTCSTMLKTLKPSTRVPLSLV 401
           R+  F TCS  +KT+K    +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 299 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 210
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 167 DEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHL 346
           D YY + + + V      +TN   V+E +K Y     P + ++S       EEAIA FH 
Sbjct: 65  DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112

Query: 347 FYYAKD 364
           +Y  K+
Sbjct: 113 YYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 167 DEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHL 346
           D YY + + + V      +TN   V+E +K Y     P + ++S       EEAIA FH 
Sbjct: 65  DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112

Query: 347 FYYAKD 364
           +Y  K+
Sbjct: 113 YYEGKE 118


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 299 IFYQKLREEAIALFHLFYYAKDFETFYKSA-AFARVHLNEGQFLYAYYIA 445
           +FY       IA F  + Y K  +T YKSA AF R  L  G+FL AY +A
Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL-AYALA 148


>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -3

Query: 397 SESGTLVEGFKVF-SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGV 221
           + + TL E F    S+V  V    S F  +L+   E+++L  + ++V    F+  F IG+
Sbjct: 2   ASNATLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGI 60

Query: 220 VIDV 209
           +IDV
Sbjct: 61  IIDV 64


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
          protein F40G9.12 protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 20 SSGAHCPRAIQCGVT 64
          +SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42


>AC084153-3|AAK84595.1|  153|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.6 protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 230 YWCSYRCWLQRHSPFQFCSIHHQR*LGLHLGKGINLFLAL-HKHCVD 93
           YW  Y    +R+   Q  + H+ R  GLH G  I+  +A+  K C D
Sbjct: 59  YWDFYTNIPERNCAGQDPNYHYSRTFGLHAGDNISGSVAVKSKECFD 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,212
Number of Sequences: 27780
Number of extensions: 238040
Number of successful extensions: 598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)