Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B13
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   1.5  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   1.5  
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    28   3.5  
At2g24700.1 68415.m02951 transcriptional factor B3 family protei...    28   4.6  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   4.6  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   6.1  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   6.1  
At4g07524.1 68417.m01175 GTP-binding protein, putative similar t...    27   6.1  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   8.0  

>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 110 GAPEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 268
           G P K L     + + N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 527 GKPVKNLKGLAGMVE-NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
 Frame = +2

Query: 65  ENVSLQDKRCRRSVCGAPEKGLSLFQD-----VDQVNVDDEYYKIGKDYDVEANIDNYTN 229
           EN   +DKR R       EK   +  D     +DQ+   D+  K+G  Y  EA IDN   
Sbjct: 65  ENKFAKDKRVRERDL-LKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILT 123

Query: 230 KKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHL 409
               ++   +          EF +F Q     +  +F +F   ++   F +   +  + L
Sbjct: 124 SSYKKDRTNIQESDLHATALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISL 181

Query: 410 NEGQFL 427
            E  +L
Sbjct: 182 YEASYL 187


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 116 PEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 256
           P KGLS F D D    DD+      DYDV+ +       +  EE  K
Sbjct: 2   PRKGLSNFDDYDD-GFDDDDDAFDYDYDVDIDEHEEAAAEPKEEIAK 47


>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 555

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +2

Query: 53  CGVTENVSLQDKRCRRSVCGAPEKGL-SLF-QDVDQVNVDDEYYKIGKDYDVEANIDNYT 226
           CG TENVS + K  +R    AP+  L S F   V   N+  +   I K++ +   + N  
Sbjct: 123 CG-TENVSSKKKSLKREAESAPDNSLDSCFVATVTGSNLKRDTLYIPKEFALSNGLMNKY 181

Query: 227 NKKAVEEFLKLYRIGYLPKYYEFSIFYQK 313
               + E  + ++I    + Y +  FY +
Sbjct: 182 QIVLMNEEGESWKIDLRREAYNYGRFYMR 210


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 397 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 251
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 292 LIVLGKITDSVQFQEFFNSFLIGVVI 215
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 292 LIVLGKITDSVQFQEFFNSFLIGVVI 215
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At4g07524.1 68417.m01175 GTP-binding protein, putative similar to
           GTP-binding protein [Pisum sativum]
           gi|303736|dbj|BAA02109
          Length = 70

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 67  KRITSRQKMSTQCLWSARKRFIPFPR 144
           + IT + K+    +W +RK FIPF R
Sbjct: 18  RTITLQGKLVKDQIWESRKSFIPFSR 43


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 395 ARVHLNEGQFLYAYYIAVIQRNDTHGFV 478
           AR  L+EG  L  +Y+ ++++ DT+  V
Sbjct: 295 ARTILSEGGVLQVHYVKILEKGDTYEIV 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,738
Number of Sequences: 28952
Number of extensions: 217175
Number of successful extensions: 550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)