Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B12
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   5.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 328  FQFFFRGLFRIKFIQSTV 381
            F FFFR LF+I F+ + +
Sbjct: 1020 FMFFFRNLFQIVFVLAVI 1037


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 232 NSMTDNCNDSMNSSPNIQNAMTDNCD*KNGSSIPN 128
           NS T + N   + SPN  +  TD+    N +S P+
Sbjct: 370 NSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,246
Number of Sequences: 5004
Number of extensions: 23106
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)