Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_B12
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140...    29   1.7  
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930...    29   2.9  
03_05_0546 + 25429140-25429480,25430539-25431676                       28   5.1  

>03_05_0284 -
           22712390-22712899,22712978-22713304,22713742-22714091,
           22714176-22714401,22714655-22714728,22715813-22716152
          Length = 608

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 277 TDNCGDSMIRSQTIQNSMTDNCNDSMNSSPNIQ 179
           +D   +++IRS T+ N + D+  D++NS P  +
Sbjct: 531 SDKLANAIIRSSTVGNELPDDLWDNLNSLPGFE 563


>09_06_0257 +
           21891523-21891578,21891911-21892421,21893021-21893092,
           21893571-21893875,21894085-21894196,21894514-21894750,
           21894933-21895640
          Length = 666

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 343 ERRIERNNCEMMILSPTFQNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPN 185
           ER+I   N + +  S +F     DN G S   +     S+ DNC+ + NSS N
Sbjct: 225 ERQITCWNQQCLNESCSFNFISCDNTGSSSYLTWGKNTSIFDNCDPNRNSSAN 277


>03_05_0546 + 25429140-25429480,25430539-25431676
          Length = 492

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 289 QNEMTDNCGDSMIRSQTIQNSMTDNCNDSMNSSPN 185
           QN++ ++CG   +  QT Q+  T+ CN ++   P+
Sbjct: 428 QNQVEESCGFQGLAVQTQQDPSTNACNFTIQIEPS 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,620,206
Number of Sequences: 37544
Number of extensions: 141865
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)